A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
Bioconductor package for management of multi-assay data
Bioconductor facilities for parallel evaluation
Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
Toolbox package for organizing and working with TCGA data
A unified framework for working transparently with on-disk and in-memory array-like datasets
Computable build reports, package metadata, and download stats from the Bioconductor project
Functional enrichment analysis of high-throughput omics data
Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment
Client for the Bioconductor AnnotationHub web resource
Single Cell multimodal data scripts for downloading datasets
Interpretation of RNAseq experiments through robust, efficient comparison to public databases
Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using large-scale public data resources including the Gene Expression Omnibus GEO, Sequence Read Archive SRA, the Genomic Data Commons GDC, and Bioconductor-hosted curated data resources for metagenomics, pharmacoge…
HDF5 datasets as array-like objects in R
The curatedOvarianData package provides data for gene expression analysis in patients with ovarian cancer
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