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@tskit-dev

Tskit developers

Software for the creation and analysis of tree-sequences.

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  1. tskit tskit Public

    Population-scale Ancestral Recombination Graph (ARG) library

    Python 162 77

  2. msprime msprime Public

    Simulate genealogical trees and genomic sequence data using population genetic models

    Python 191 87

  3. tsinfer tsinfer Public

    Infer a tree sequence from genetic variation data.

    C 59 15

  4. tsdate tsdate Public

    Infer the age of ancestral nodes in a tree sequence.

    Python 21 10

  5. tutorials tutorials Public

    A set of tutorials for msprime and tskit.

    Jupyter Notebook 20 17

  6. tszip tszip Public

    Gzip-like compression for tskit tree sequences

    Python 5 7

Repositories

Showing 10 of 27 repositories
  • tskit-rust Public

    Rust bindings for the tskit library

    tskit-dev/tskit-rust’s past year of commit activity
    C 16 MIT 5 10 (1 issue needs help) 21 Updated May 21, 2025
  • tskit Public

    Population-scale Ancestral Recombination Graph (ARG) library

    tskit-dev/tskit’s past year of commit activity
    Python 162 MIT 77 276 (2 issues need help) 9 Updated May 21, 2025
  • tskit-site Public

    tskit website

    tskit-dev/tskit-site’s past year of commit activity
    HTML 0 1 24 0 Updated May 21, 2025
  • pyslim Public

    Tools for dealing with tree sequences coming to and from SLiM.

    tskit-dev/pyslim’s past year of commit activity
    Python 27 MIT 23 39 2 Updated May 17, 2025
  • tutorials Public

    A set of tutorials for msprime and tskit.

    tskit-dev/tutorials’s past year of commit activity
    Jupyter Notebook 20 CC-BY-4.0 17 24 4 Updated May 14, 2025
  • msprime Public

    Simulate genealogical trees and genomic sequence data using population genetic models

    tskit-dev/msprime’s past year of commit activity
    Python 191 GPL-3.0 87 77 (1 issue needs help) 14 Updated May 7, 2025
  • tsbrowse Public

    Utilities for evaluating inferred tree sequences

    tskit-dev/tsbrowse’s past year of commit activity
    Python 3 MIT 8 20 2 Updated Apr 28, 2025
  • genetic-relatedness-paper Public

    Manuscript and files for the Genetic relatedness paper

    tskit-dev/genetic-relatedness-paper’s past year of commit activity
    TeX 0 0 1 0 Updated Apr 15, 2025
  • tsinfer Public

    Infer a tree sequence from genetic variation data.

    tskit-dev/tsinfer’s past year of commit activity
    C 59 GPL-3.0 15 102 4 Updated Apr 1, 2025
  • tsdate Public

    Infer the age of ancestral nodes in a tree sequence.

    tskit-dev/tsdate’s past year of commit activity
    Python 21 MIT 10 37 (2 issues need help) 3 Updated Mar 31, 2025
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