Enzymes PDF
Enzymes PDF
Enzymes PDF
BIOCHEMISTRY
School of Health & Allied Health Sciences
Southwestern University
Enzymes:
Outline:
✔ Importance of enzymes
✔ Enzyme structure and General function
✔ Co-enzymes
✔ Metalloproteins
✔ Nomenclature and classification of enzymes
✔ MOA of enzymes
✔ Models of enzyme action
✔ Enzyme specificity
✔ Factors That Affect Enzyme Activity)
✔ Extremophiles
✔ Enzyme inhibition
✔ Regulation of enzyme activity
✔ Allosteric enzymes
✔ Proteolytic enzymes
✔ Medically important enzymes
ENZYMES
• Greek word en “in” and zyme “yeast”
• Enzymes are biological catalyst that speed up the rate of the biochemical reaction.
• Most of the enzymes are three dimensional globular proteins (tertiary and quaternary structure)
Note: With the exception of a few catalytic RNA molecules, or ribozymes which made of ribonucleic acids
and that catalyze cellular reactions involving nucleic acids.
BIOCHEMICAL IMPOTRTANCE of Enzymes
❖ Biological catalyst
▪ They increase the rate of chemical reactions taking place within living
cells with out changing themselves.
▪ As catalyst, enzymes are not consumed during the reaction but merely help
the reaction occur more rapidly.
❖ Specificity
▪ A given enzyme is very selective
▪ Both in the substances with which it interacts and in the reaction
that it catalyzes
❖ Regulate metabolism
▪ play key role in the degradation and synthesis of nutrients: ex.
digestion
presence and maintenance of a complete and balanced set of enzymes is
essential for the breakdown of nutrients to supply energy or to harness
energy to power cell motility and activity
▪ Synthesis of biomolecules
the assembly of those building blocks into proteins, DNA, membranes,
cells, and tissues
TERMS DEFINITION
simple enzyme • is an enzyme composed only of protein (amino acids) not bound to any nonproteins
conjugated enzyme • is an enzyme that has a nonprotein part in addition to a protein part
apoenzyme • is the protein part of a conjugated enzyme or holoenzyme
• enzyme lacking an essential cofactor
cofactor • is the nonprotein part of a conjugated enzyme or holoenzyme
• serve functions similar to those of prosthetic groups but bind in a transient, dissociable
manner either to the enzyme or to a substrate such as ATP.
prosthetic group • Tightly bound cofactor to the apoenzyme
holoenzyme • is the biochemically active conjugated enzyme produced from an apoenzyme and a
cofactor
• Intact and functional enzyme containing all cofactors/ coenzyme
Coenzyme or • is a small organic molecule that serves as a cofactor in a conjugated enzyme
cosubstrate
activator • the inorganic cofactor
Substrate (S) • is the reactant in an enzyme-catalyzed reaction
• biomolecule that enzymes react with
Product (P) • the biomolecules formed by enzyme mediated reactions
metal-activated • Enzymes that require a metal ion cofactor
enzymes
metalloenzymes. • enzymes that contain tightly bound metal ions
Enzyme and substrate interaction
ENZYME
Nature
of Conjugated
enzyme
Simple Enzyme
Ex. Pancreatic
Ribonuclease
Enzyme:
Apoenzyme Cofactor
METAL ION
Fe 2+, Mn 2+,Zn 2+,Mg2+,
Ca2+,K+,Cu2+, Co2+
METAL-ACTIVATE
D ENZYME
(needs ion)
METALLOENZYME
(has tightly bound
ions)
Cofactor, Coenzyme,
Prothetic group?
• Cofactor – is the nonprotein part of the conjugated enzyme. It
is generally either a small organic molecule or an inorganic
ion (usually a metal ion)
Carboxypeptidase A is a protease enzyme that hydrolyzes (cleaves) a peptide bond at the carboxy-terminal
(C-terminal) end of a protein or peptide
Mn2+ Pyruvate Synthesize oxaloacetate
carboxylase
Fe Hemoglobins transports oxygen from the lungs to the capillaries of the tissue.
Group specificity
:the extent to which an • the enzyme will act only on molecules that
enzyme’s activity is restricted have a specific functional group, such as
to a specific substrate, a hydroxyl, amino, or phosphate groups.
specific group of substrates, a • Examples:
specific type of chemical bond, • Carboxypeptidase - it cleaves amino
or a specific type of chemical acids, one at a time, from the carboxyl
reaction end of a peptide chain.
• Esterases- acts on ester bonds
• Peptidases-acts on peptide bonds
• Glycosidases- acts on glycosidic bonds.
Linkage specificity
•the enzyme will act on a particular type
of chemical bond, irrespective of the
rest of the molecular structure. This is
the most general of the common
specificities.
•Ex. Phosphatases
•hydrolyze phosphate-ester bonds in all
types of phosphate esters
Enzyme
Stereochemical specificity
specificity • some enzymes are specific to only one
isomer even if the compound is one type
of molecule:
• Ex. glucose oxidase catalyzes the oxidation
of β-D-glucose but not α-D-glucose, and
arginase catalyzes the hydrolysis of
L-arginine but not D-arginine. Maltase
catalyzes the hydrolysis of α- but not β
–glycosides.
FACTORS THAT AFFECT THE
RATE OF ENZYME ACTIVITY
FACTORS THAT AFFECT THE
RATE OF ENZYME ACTIVITY
Chemical connection:
H. pylori and Stomach
Ulcers
Extremophile • is a microorganism that thrives in extreme
environments, environments in which humans
and most other forms of life could not
survive.
EXTREMOZYME
• is a microbial enzyme active at conditions
that would inactivate human enzymes as well
as enzymes present in other types of higher
organisms.
• cellulases, amylases, xylanases, proteases,
pectinases, keratinases, lipases, esterases,
catalases, peroxidases and phytases
USE:
• detergent formulations
Yellow Stone National Park and
Northeast Pacific Ocean • the petroleum industry during oil well
drilling operations
Extremophile
• acidophiles
• optimal growth at pH levels of 3.0 or below
• alkaliphiles
• optimal growth at pH levels of 9.0 or above
• halophiles
• a salinity that exceeds 0.2 M NaCl needed for growth
• Hypothermophiles
• a temperature between 80°C and 122°C needed to thrive
• cryophiles
• a temperature of 15°C or lower needed for growth
• piezophiles
• a high hydrostatic pressure needed for growth
Extremophile: H. pylori and Stomach Ulcers
UREASE
UREA in the surface of the bacterium--------------- NH3+
ENZYME INHIBITION
Ethanol
10X affinity
alcohol
dehydrogenase
formaldehyde
ENZYME INHIBITION
WAYS OF REGULATION
(1) feedback control associated with
allosteric enzymes
(2) production of enzymes in an inactive
form:
proteolytic enzymes and zymogens
(3) covalent modification
Allosteric Enzymes
- Greek allo, means “other,” and
stereos, means “site or space.”
- is an enzyme with two or more protein
chains (quaternary structure) and two
kinds of binding sites (substrate and
regulator)
❖ Regulators- substances that bind
at regulatory sites of allosteric
enzymes.
❖ Positive regulator increases
enzyme activity; the shape of the
active site is changed such that it
can more readily accept substrate.
❖ Negative regulator (a
noncompetitive inhibitor; decreases
enzyme activity; changes to the
active site are such that substrate
is less readily accepted.
Feedback Control associated with Allosteric enzyme
EXAMPLES:
▪ Pepsinogen ------- pepsin
▪ Tyrpsinogen ------- trypsin
▪ Chymotrypsinogen ------ chymotrypsin
▪ Angiotensinogen ------- angiotensin
Prescription Drugs That
Inhibit Enzyme Activity
ACE Inhibitors Illustration: Effect of ACE inhibitors
- MOA: Blocks the action of
Asp-Arg-Val-Tyr-Ile-His-Pro-Phe-His-Leu
angiotensinogen (specifically angiotensin
(Angiotensinogen)
I) to form the vasoconstrictor,
a2- globulin in blood
angiotensin II. These inhibitors also
Renin (kidney)
diminish the rate of bradykinin (potent
vasodilator) inactivation.
- Effect: Vasodilation occurs as a result of Angiotensin I (inactive)
the combined effects of lower
vasoconstriction caused by diminished ACE Inhibitors ACE
levels of angiotensin II and the potent
vasodilating effect of increased Asp-Arg-Val-Tyr-Ile-His-Pro-Phe +
His-Leu
bradykinin. Decrease aldosterone: Decrease Angiotensin II (vasoconstrictor)
Retention of sodium and water
Increase Levels of
Decrease output of sympathetic nervous bradykinin
system
Increase vasodilation of vascular smooth
Overall Effect: DECREASE BLOOD muscle
PRESSURE
Prescription Drugs That Inhibit Enzyme
Activity
Sulfa Drugs
▪ Folic acid coenzymes are required
for the synthesis of purines and
pyrimidines (precursor of RNA and
DNA) and other compounds for
cellular growth and replication.
▪ Folic acid deficiency retards
growth of the bacteria and can
eventually kill them
▪ Sulfonamides are synthetic
structural analogs of PABA
▪ MOA: acts as a competitive
inhibitor to enzymes in the
biosynthetic pathway for converting
PABA into folic acid, specifically
competes with the substrate(PABA)
for the enzyme dihydropteroate
synthetase.
Prescription Drugs That Inhibit Enzyme
Activity
Penicillins
▪Transpeptidase, an enzyme that
catalyzes the formation of peptide
cross links between polysaccharide
strands in bacterial cell walls. These
cross links strengthen cell walls
necessary to protect the bacterium
from lysis
▪MOA: Interfere with the last step of Penicillin, once bound to the active site, the b-lactam
bacterial cell wall synthesis ring opens as the highly reactive amide bond forms a
covalent bond to a critical serine residue required for
(transpeptidation or cross-linkage) normal catalytic action. The result is an irreversibly
thus inhibiting transpeptidase enzyme inhibited transpeptidase enzyme.
(as very selective competitive
inhibitor) exposing the osmotically less
stable membrane causing lysis.
Prescription Drugs That Inhibit Enzyme Activity
“GRAPEFRUIT EFFECT: Inhibition of Felodipine , nifedipine, Calcium-channel blockers used to treat high
cP450 by the compound BERGAMOTTIN nimodipine, nisoldipine blood pressure
and 6',7'-Dihydroxybergamottin of a
Saquinavir An HIV medication
grapefruit:
Simvastatin, lovastatin , Statins used to treat high cholesterol
atorvastatin
ENZYME ACTIVITY: Inhibitors
& Inducers
CYP 450 Inhibitors CYP 450 Inducers
SICKFACES.COM
– Sodium valproate CRAP GPS
– Isoniazid – Carbamazepines
– Cimetidine – Rifampicin
– Ketoconazole
– Alcohol (chronic)
– Fluconazole
– Alcohol (binge drinking) – Phenytoin
– Chloramphenicol
– Erythromycin – Griseofulvin
– Sulfonamides
– Phenobarbitone
– Ciprofloxacin
– Omeprazole – Sulphonylureas
– Metronidazole
– Grapefruit juice
BIOCHEMICAL IMPOTRTANCE: Enzymes
Important tool in diagnostic procedures (involving
enzyme assay)
• assist to know damaged tissues
• assist the extent of tissue damage
• helps to monitor the course of the
disease
• used as a therapeutic means of
diagnosing a vast array of diseases
MEDICALLY USEFUL ENZYME
Creatine kinase
is an enzyme that is found primarily in skeletal and cardiac
muscle and in smaller fractions in the brain
TYPES OF CK
• muscle (CK-MM)
• brain (CK-BB),
• cardiac tissue (CK-MB) - important marker in
the diagnosis of acute myocardial infarction
(AMI)
MEDICALLY USEFUL ENZYME
• TROPONIN
Description
• Troponin I and T are sensitive markers of cardiac injury.
• Troponin I is found solely in the cardiac muscle, and
• Troponin T is found in both cardiac and skeletal muscle.
Clinical Significance
• Troponin levels begin to rise within 4 hours of onset of chest pain. Levels
should be drawn on admission and within 8 to 12 hours thereafter. Patients
with elevated troponin levels are considered at high risk for a significant
cardiac event.
• Approximately 30% of patients with no elevation in CK-MB may
demonstrate elevated troponin and thus be diagnosed with a non-Q-wave
myocardial infarction.
MEDICALLY USEFUL ENZYME
• GASTROINTESTINAL TESTS
Alanine Aminotransferase/ serum glutamic
pyruvic transaminase (SGPT).
- liver tissue. It is also located in myocardial, muscle, and renal tissue
- considered a specific marker for liver disease
Aspartate Aminotransferase/ serum glutamic
oxaloacetic transaminase (SGOT
- found in the liver. It is also present in the heart, kidney, pancreas,
lungs, and skeletal muscle
For diagnosis of liver disease
MEDICALLY USEFUL ENZYME
GASTROINTESTINAL TESTS
• g-Glutamyl Transpeptidase
an enzyme found in the liver, kidney, and pancreas. GGT levels are
useful in the diagnosis and monitoring of alcoholic liver disease
Increased GGT may be seen in alcoholic liver disease, metastatic liver
disease, obstructive jaundice, cholelithiasis, and pancreatitis
• Lactate Dehydrogenase
enzyme involved in the interconversion of lactate and pyruvate.
is found in many tissues, including heart, brain, liver, skeletal muscle,
kidneys, lungs, and RBCs.
LDH4 and LDH5 are present in liver tissue, and elevations may be
seen in liver disease such as hepatitis and cirrhosis.
LDH1 and LDH2 may be useful in the diagnosis of myocardial
infarction
MEDICALLY USEFUL ENZYME
GASTROINTESTINAL TESTS
• Lipase
• enzyme that aids in the digestion of fat. It is primarily secreted
by the pancreas.
• useful in the diagnosis of pancreatitis and is considered a more
specific marker for pancreatitis than amylase
• Amylase
• enzyme that aids in digestion by breaking down complex
carbohydrates into simple sugars.
• The majority of amylase is produced in the pancreas and
salivary glands, and lesser amounts are secreted by the
fallopian tubes, lungs, thyroid, and tonsils
• Serum amylase levels are most often used in the diagnosis of
acute pancreatitis
Condition Isoenzyme pattern
Myocardial infarction Moderate elevation of LDH1, slight
elevation of LDH2
Acute hepatitis Large elevation of LDH5, Moderate
elevation of LDH4
Muscular dystrophy Elevation of LDH1-3
Megaloblastic anemia Large elevation of LDH1
Sickle cell anemia Moderate elevation of LDH1 and LDH2
Arthritis with joint infections Elevation of LDH5
Serum Enzyme Major diagnostic use
Amylase Liver and pancreatic disease
Acid phosphate Prostate cancer
Alkaline phosphatase Liver and bone disease
Creatine phosphokinase Myocardial infarction and muscle
disorders
Lactate dehydrogenase Myocardial infarction, leukemia, anemia
Renin Hypertension
Serum Enzyme Major diagnostic use
Glutamic oxaloacetic transaminase Myocardial infarction
(SGOT)
Glutamic pyruvic transaminase (SGPT) Infectious hepatitis
Trypsin Acute pancreatitis
Ceruplasmin Wilson’s disease
Medical Uses of Enzymes
Serum Enzyme Major Diagnostic Use: Condition Indicated by
Abnormal Level
lactate dehydrogenase (LDH)
LDH1 and LDH2 heart disease (ex. AMI),
LDH4 and LDH5 liver disease (hepatitis and cirrhosis)
creatine phosphokinase (CPK) Heart disease