Enzymes Dr. Madhur Gupta
Enzymes Dr. Madhur Gupta
Enzymes Dr. Madhur Gupta
•Coenzymes / cofactors
Discovery:
ZYMASE ZYMOGEN
SUBSTRATE PRODUCT
IRREVERSIBLE REVERSIBLE
MONOMERIC - ribonuclease
OLIGOMERIC – LDH
MULTIENZYME – Py Dh, FA synthetase
special pocket or cleft called the active sites.
Chemical nature
Class 1: Oxidoreductases
Class 2: Transferases
Class 3: Hydrolases
Class 4: Lyases
Class 5: Isomerases
Class 6: Ligases
E.C.1 Oxidoreductases
• Transaminases
• Transmethylase
• Transpeptidase
• Phosphotransferase
• Acetyl transferase
E.C.3 Hydrolase
Catalysing hydrolytic breakdown of different bonds.
Most of the GIT enzymes belong to this class
• Pyruvate decarboxylase
• Fumarase
E.C.5 Isomerase
Involved in inter conversion of pair of isomeric
compounds
• Phosphoglucomutase
• Phosphohexose isomerase
• Retinene isomerase
E.C.6 Ligases
Catalyze reactions in which linking together of two
molecules occur coupled with the breakdown of a high
energy phosphate bonds like ATP, GTP
• This is an older model and does not work for all enzymes
Induced Fit Model (Koshland)
- the active site is flexible, not rigid
- the shapes of the enzyme, active site, and substrate
adjust to maximize the fit, which improves catalysis
- there is a greater range of substrate specificity
• This model is more consistent with a wider range of
enzymes
Factors affecting enzyme activity (velocity of enzy)
Enzyme activity: expressed as IU
A unit of activity is defined as the amount of enzyme that will produce
1 micromoles of product per minute at 250 C under standardized
conditions
1. Conc of enzyme
2. Conc of substrate
3. Temperature
4. H+ ion conc or pH
5. Time
6. Product of reaction
7. Coenzyme conc
8. Enzyme activator (Cofactor)
9. Effect of oxidation
10.Effect of radiation
11.Enzyme inhibitors
CONC OF ENZYME
Velocity is directly proportional to enzyme concentration
(subject to availability of substrate)
Initial reaction rate / arbitrary
Enzy conc
CONC OF SUBSTRATE
1st phase
1st order kinetics
Half enzy saturated with subs
Subs. conc required for
attaining half the maximum
velocity (activity) of the
enzyme
Km
LIMITATIONS OF MM MODEL
SIGMOIDALCURVE FOR Hb
Indicates cooperative binding
of substrate to multiple sites
Lineweaver- burk plot
EFFECT OF TEMPERATURE
Same compound can act as coenzyme for more than one enzyme.
Most water soluble vitamins are converted in the body into coenzyme.
2. S-adenosyl methionine
•Lipoic acid
Eight carbon disulphide containing carboxylic acid i.e
attached to dihydrolipoyl transacetyalse by an amide bond.
Pyruvate DH and α KG DH
•Biotin
Required for carboxylation reactions
Eg: Pyruvate carboxylase
Propionyl carboxylase
Acetyl CoA Carboxylase
•Cobamide or B12
Cobalt containing B complex vitamin
Methyl malonyl CoA to Succinyl CoA
•S-adenosyl methionine
-Transmethylation reaction
Metalloenzymes:
Metal tightly bound to enzyme
Ornithine decarboxylase
Feedback inhibition / End product inhibition
Induction – barbiturates
Negative cooperativity-
Salient features of allosteric inhibition
Lac operon
ENZYMES USED AS THERAPEUTIC AGENTS
Enzyme Therapeutic application
Asparaginase Acute lymphoblastic leukemia
Streptokinase To lyse intravascular clot
Urokinase To lyse intravascular clot
Recombinant tissue prothrombin Lysis of clot, especially for
activator (rtPA) cerebrovascular thrombolysis
Streptodornase DNAse applied locally
Pancreatin (trypsin and lipase) Pancreatic insufficiency; oral
administration
Papain Anti-inflammatory
Alpha-1-antitrypsin AAT deficiency; emphysema
ENZYMES USED IN LABORATORY MEASUREMENTS
V. Prostate cancer
1. Prostate specific antigen (PSA): Marker for prostate cancer. Mild
increase in benign prostate enlargement
2. Acid phosphatase (ACP): Marker for prostate cancer. Metastatic
bone disease especially from a primary form prostate. Inhibited by
L tartrate.
A B A B A B
PA LA
NAD NADH