SDS Page 1 & 2D

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Sodium Dodecyl Sulfate-Polyacrylamide gel

Electrophoresis (SDS-PAGE)
1. Catalase, cytochrome C,
a-lactalbumin
2. Hemoglobin, Cytochrome C, a- 1 2 3 4 5 6
lactalbumin
3. BSA, cytochrome C,
a-lactalbumin
4. Hemoglobin, myoglobin,
a-lactalbumin
5. Ferritin, cytochrome C,
a-lactalbumin
6. Ferritin, myoglobin,
lighter
a-lactalbumin
SDS-PAGE

Protein separation based on their molecular weight

SDS: protein having negative charge, used to


denature proteins
How SDS-PAGE works

- SDS-treated-proteins have uniformed structure and charge  the separation will depend on
their molecular weight only.

- Small proteins migrate faster through the gel under the influence of the applied electric field,
whereas large proteins move slower, due to the sieving effect of the gels.
Polyacrylamide gel

- The polyacrylamide gel is formed by co-polymerization of acrylamide and a cross-


linking by bis-acrylamide “.
- Smaller pore than agarose thanks to smaller size of proteins than DNA
- Average size of protein: 35-50 kDa
- Average size of DNA: 2000 kDa

-To polymerize the gel a system, consisting of ammonium persilfate (APS) (initiator) and
tetramethylene ethylene diamin (TEMED) is added[catalyst].
Stacking gel ad separation gel
Concentration of stacking gel is smaller than separation gel
What if 2 proteins have the same molecular weight?
2D gel electrophoresis
pH
3 10

High mol. Wt.

SDS PAGE

Low mol. Wt.

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