BCH 403 24_25
BCH 403 24_25
BCH 403 24_25
Biochemistry of kidney
Kidneys are one of the vital organs of the body. They are a pair of organs located in the back of
the abdomen. Each kidney is about 4 or 5 inches long. The kidney is approximately 11–14 cm in
length, 6 cm wide and 4 cm thick.
The asymmetry within the abdominal cavity caused by the liver typically results in the right kidney
being slightly lower than the left, and the left kidney is located slightly more medial than the right.
The left kidney is approximately at the vertebral level, and the right slightly lower. The right kidney
sits just below the diaphragm and posterior to the liver, the left below the diaphragm and posterior
to the spleen. Resting on top of each kidney is an adrenal gland. Each adult kidney weighs between
125 and 170 grams in males and between 115 and 155 grams in females.
Each kidney is divided into three main regions, cortex (outer), medulla (inner), and pelvis (Figure
1). The renal corpuscles are located within the cortex. The nephron which spans the cortex and
medulla is the functional unit of the kidney. Each kidney contains around a million units of
nephrons, each of which is a microscopic filter for blood.
The kidneys' function is to filter the blood. All the blood in our bodies passes through the kidneys
several times a day. The kidneys remove wastes, control the body's fluid balance, and regulate the
balance of electrolytes. As the kidneys filter blood, they create urine, which collects in the kidneys'
pelvis -- funnel-shaped structures that drain down tubes called ureters to the bladder.
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Figure 1: Diagram of the kidney
Legend: 1. Renal pyramid. 2. Interlobular artery. 3. Renal artery. 4. Renal vein. 5. Renal hilum. 6. Renal
pelvis. 7. Ureter. 8. Minor calyx. 9. Renal capsule. 10. Inferior renal capsule. 11. Superior renal capsule.
12. Interlobular vein. 13. Nephron. 14. Minor calyx. 15. Major calyx. 16. Renal papilla 17. Renal column
Functions of kidney
1. ROLE IN HOMEOSTASIS
During the formation of urine, kidneys regulate various activities in the body, which are concerned
Kidneys excrete the unwanted waste products, which are formed during metabolic activities:
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b. Uric acid (end product of nucleic acid metabolism)
Kidneys also excrete harmful foreign chemical substances such as toxins, drugs, heavy metals
pesticides, etc.
Kidneys maintain the water balance in the body by conserving water when it is decreased and
excreting water when it is excess in the body. This is an important process for homeostasis.
retain sodium if the osmolarity of body water decreases and eliminate sodium when osmolarity
increases.
The pH of the blood and body fluids should be maintained within a narrow range for healthy living.
It is achieved by the function of the kidneys. The body is under constant threat to develop acidosis,
because of the production of a lot of acids during metabolic activities. However, it is prevented by
kidneys, lungs and blood buffers, which eliminate these acids. Among these organs, kidneys play
a major role in preventing acidosis. In fact, kidneys are the only organs, which are capable of
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2. HEMOPOIETIC FUNCTION
an important stimulating factor for erythropoiesis. The kidney also secretes another factor called
3. ENDOCRINE FUNCTION
i. Erythropoietin
ii. Thrombopoietin
iii. Renin
v. Prostaglandins.
Kidneys play an important role in the long-term regulation of arterial blood pressure in two ways:
Kidneys play a role in the regulation of blood calcium levels by activating 1,25
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FUNCTIONAL UNIT OF KIDNEY (NEPHRON)
Each kidney in the human contains about 1 million nephrons, each capable of forming urine. The
kidney cannot regenerate new nephrons. Therefore, with renal injury, disease, or normal aging,
there is a gradual decrease in nephron number. After age 40, the number of functioning nephrons
usually decreases about 10 percent every 10 years; thus, at age 80, many people have 40 percent
fewer functioning nephrons than they did at age 40. This loss is not life-threatening because
adaptive changes in the remaining nephrons allow them to excrete the proper amounts of water,
Each nephron contains a tuft of glomerular capillaries called the glomerulus, through which large
amounts of fluid are filtered from the blood and a long tubule in which the filtered fluid is
converted into urine on its way to the pelvis of the kidney. The glomerulus contains a network of
branching and anastomosing glomerular capillaries. The glomerular capillaries are covered by
epithelial cells, and the total glomerulus is encased in Bowman’s capsule. Fluid filtered from the
glomerular capillaries flows into Bowman’s capsule and then into the proximal tubule, which lies
in the cortex of the kidney. From the proximal tubule, fluid flows into the loop of Henle, which
dips into the renal medulla. Each loop consists of a descending and an ascending limb. The walls
of the descending limb and the lower end of the ascending limb are very thin and therefore are
After the ascending limb of the loop has returned partway back to the cortex, its wall becomes
much thicker, and it is referred to as the thick segment of the ascending limb. At the end of the
thick ascending limb is a short segment, which is actually a plaque in its wall, known as the macula
densa. The macula densa plays an important role in controlling nephron function. Beyond the
macula densa, fluid enters the distal tubule, which, like the proximal tubule, lies in the renal cortex.
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This is followed by the connecting tubule and the cortical collecting tubule, which lead to the
cortical collecting duct. The initial parts of 8 to 10 cortical collecting ducts join to form a single
larger collecting duct that runs downward into the medulla and becomes the medullary collecting
duct. The collecting ducts merge to form progressively larger ducts that eventually empty into the
renal pelvis through the tips of the renal papillae. In each kidney, there are about 250 of the very
large collecting ducts, each of which collects urine from about 4000 nephrons (Figure 2).
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Figure 2: Structure of the nephron
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SECRETION OF HORMONES BY KIDNEY
1. Renin
2. Prostaglandin.
1. Renin
Juxtaglomerular cells secrete renin. Renin is a peptide with 340 amino acids. Along with
angiotensins, rennin forms the renin-angiotensin system, which is a hormone system that plays an
important role in the maintenance of blood pressure. Secretion of renin is stimulated by four
factors:
Renin-angiotensin system
When renin is released into the blood, it acts on a specific plasma protein called angiotensinogen
converted into a decapeptide called angiotensin I. Angiotensin I is converted into angiotensin II,
the lungs. Most of the conversion of angiotensin I into angiotensin II takes place in the lungs.
Angiotensin II has a short half-life of about 1 to 2 minutes. Then it is rapidly degraded into a
heptapeptide called angiotensin III by angiotensinases, which are present in RBCs and vascular
beds in many tissues. Angiotensin III is converted into angiotensin IV, which is a hexapeptide.
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Actions of Angiotensins
Angiotensin I is physiologically inactive and serves only as the precursor of angiotensin II.
On blood vessels:
i. Angiotensin II increases arterial blood pressure by directly acting on the blood vessels and
causing vasoconstriction. It is a potent constrictor of arterioles. Earlier, when its other actions were
ii. It increases blood pressure indirectly by increasing the release of noradrenaline from
On adrenal cortex:
It stimulates zona glomerulosa of adrenal cortex to secrete aldosterone. Aldosterone acts on renal
tubules and increases retention of sodium, which is also responsible for the elevation of blood
pressure.
On kidney:
a. It constricts the efferent arteriole, which causes decrease in filtration after an initial increase
b. It contracts the glomerular mesangial cells leading to decrease in surface area of glomerular
ii. It increases sodium reabsorption from renal tubules. This action is more predominant on
proximal tubules.
On brain:
i. Angiotensin II inhibits the baroreceptor reflex and thereby indirectly increases the blood
pressure. The baroreceptor reflex is responsible for decreasing the blood pressure.
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ii. It increases water intake by stimulating the thirst center
iii. It increases the secretion of corticotropin-releasing hormone (CRH) from the hypothalamus.
CRH, in turn, increases secretion of adrenocorticotropic hormone (ACTH) from the pituitary
2. Prostaglandin
is also secreted by interstitial cells of the medulla called type I medullary interstitial cells
3. Erythropoietin
Endothelial cells of peritubular capillaries in the kidney secrete erythropoietin. The stimulant for
its secretion is hypoxia. Erythropoietin is a glycoprotein with 165 amino acids. Erythropoietin
4. 1,25-dihydroxycholecalciferol
from cholecalciferol, which is present in the skin and intestine. The cholecalciferol (vitamin D3)
from the skin or intestine is converted into 25-hydroxycholecalciferol in the liver. This, in turn, is
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Figure 3: Schematic diagram showing activation of vitamin D.
5. Thrombopoietin
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URINE FORMATION
Urine formation is a blood cleansing function. Normally, about 1,300 mL of blood (26% of cardiac
output) enters the kidneys. Kidneys excrete unwanted substances along with water from the blood
Properties of urine
If stored for some time, the odour becomes stronger due to bacterial decomposition.
Composition of urine
Urine consists of water and solids. Solids include organic and inorganic substances
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Figure 5: urine secretion
When blood passes through glomerular capillaries, the plasma is filtered into the Bowman capsule.
This process is called glomerular filtration. The filtrate from Bowman capsule passes through the
tubular portion of the nephron (Figure 5). While passing through the tubule, the filtrate undergoes
various changes both in quality and quantity. Many wanted substances like glucose, amino acids,
water and electrolytes are reabsorbed from the tubules. This process is called tubular reabsorption.
And, some unwanted substances are secreted into the tubule from peritubular blood vessels. This
A. Glomerular filtration
B. Tubular reabsorption
C. Tubular secretion.
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Among these three processes filtration is the function of the glomerulus. Reabsorption and
Glomerular filtration is the process by which the blood is filtered while passing through the
glomerular capillaries by filtration membrane. It is the first process of urine formation. The
structure of filtration membrane is well suited for filtration. Glomerular filtration is called
ultrafiltration because even the minute particles are filtered. But, the plasma proteins are not
filtered due to their large molecular size. The protein molecules are larger than the slit pores present
in the endothelium of capillaries. Thus, the glomerular filtrate contains all the substances present
Tubular reabsorption is the process by which water and other substances are transported from renal
tubules back to the blood. When the glomerular filtrate flows through the tubular portion of
nephron, both quantitative and qualitative changes occur. A large quantity of water (more than
99%), electrolytes and other substances are reabsorbed by the tubular epithelial cells. The
reabsorbed substances move into the interstitial fluid of renal medulla. And from here the
substances move into the blood in peritubular capillaries. Since the substances are taken back into
the blood from the glomerular filtrate, the entire process is called tubular reabsorption. Tubular
reabsorption is known as selective reabsorption because the tubular cells reabsorb only the
substances necessary for the body. Essential substances such as glucose, amino acids and vitamins
are completely reabsorbed from renal tubule. Whereas the unwanted substances like metabolic
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waste products are not reabsorbed and excreted through urine. Basic transport mechanisms
1. Active reabsorption
2. Passive reabsorption.
1. Active Reabsorption
Active reabsorption is the movement of molecules against the electrochemical (uphill) gradient.
It needs the liberation of energy, which is derived from ATP. Substances reabsorbed actively from
the renal tubule are sodium, calcium, potassium, phosphates, sulfates, bicarbonates, glucose,
2. Passive Reabsorption
gradient. This process does not need energy. Substances reabsorbed passively are chloride, urea
and water.
Tubular secretion is the process by which the substances are transported from blood into renal
tubules. It is also called tubular excretion. In addition to reabsorption from renal tubules, some
substances are also secreted into the lumen from the peritubular capillaries through the tubular
epithelial cells. Potassium is secreted actively by sodium-potassium pump in proximal and distal
convoluted tubules and collecting ducts. Ammonia is secreted in the proximal convoluted tubule.
Hydrogen ions are secreted in the proximal and distal convoluted tubules. Maximum hydrogen ion
secretion occurs in proximal tubule. Urea is secreted in loop of Henle. Thus, urine is formed in
nephron by the processes of glomerular filtration, selective reabsorption and tubular secretion.
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HORMONAL REGULATION OF REABSORPTION
1. Aldosterone
secreted by the zona glomerulosa cells of the adrenal cortex, is an important regulator of sodium
reabsorption and potassium secretion by the renal tubules. The primary site of aldosterone action
is on the principal cells of the cortical collecting tubule. The mechanism by which aldosterone
increases sodium reabsorption while at the same time increasing potassium secretion is by
stimulating the sodium-potassium ATPase pump on the basolateral side of the cortical collecting
tubule membrane. Aldosterone also increases the sodium permeability of the luminal side of the
(Addison’s disease), there is marked loss of sodium from the body and accumulation of potassium.
Conversely, excess aldosterone secretion, as occurs in patients with adrenal tumors (Conn’s
syndrome) is associated with sodium retention and potassium depletion. Although day-to-day
regulation of sodium balance can be maintained as long as minimal levels of aldosterone are
present, the inability to appropriately adjust aldosterone secretion greatly impairs the regulation of
renal potassium excretion and potassium concentration of the body fluids. Thus, aldosterone is
even more important as a regulator of potassium concentration than it is for sodium concentration.
2. Angiotensin II
Angiotensin II increases sodium and water reabsorption. Angiotensin II is perhaps the body’s most
associated with low blood pressure and/or low extracellular fluid volume, such as during
hemorrhage or loss of salt and water from the body fluids. The increased formation of angiotensin
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II helps to return blood pressure and extracellular volume toward normal by increasing sodium
and water reabsorption from the renal tubules through three main effects:
ADH increases water reabsorption. The most important renal action of ADH is to increase the
water permeability of the distal tubule, collecting tubule, and collecting duct epithelia. This effect
helps the body to conserve water in circumstances such as dehydration. In the absence of ADH,
the permeability of the distal tubules and collecting ducts to water is low, causing the kidneys to
excrete large amounts of dilute urine. Thus, the actions of ADH play a key role in controlling the
degree of dilution or concentration of the urine. ADH binds to specific V2 receptors in the late
distal tubules, collecting tubules, and collecting ducts, increasing the formation of cyclic AMP and
activating protein kinases. This, in turn, stimulates the movement of an intracellular protein, called
aquaporin-2 (AQP-2), to the luminal side of the cell membranes. The molecules of AQP-2 cluster
together and fuse with the cell membrane by exocytosis to form water channels that permit rapid
diffusion of water through the cells. There are other aquaporins, AQP-3 and AQP-4, in the
basolateral side of the cell membrane that provide a path for water to rapidly exit the cells, although
these are not believed to be regulated by ADH. Chronic increases in ADH levels also increase the
formation of AQP-2 protein in the renal tubular cells by stimulating AQP-2 gene transcription.
When the concentration of ADH decreases, the molecules of AQP-2 are shuttled back to the cell
cytoplasm, thereby removing the water channels from the luminal membrane and reducing water
permeability.
Atrial natriuretic peptide decreases sodium and water reabsorption. Specific cells of the cardiac
atria, when distended because of plasma volume expansion, secrete a peptide called atrial
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natriuretic peptide. Increased levels of this peptide in turn inhibit the reabsorption of sodium and
water by the renal tubules, especially in the collecting ducts. This decreased sodium and water
reabsorption increases urinary excretion, which helps to return blood volume back toward normal.
5. Parathyroid Hormone
Parathyroid hormone increases calcium reabsorption. Parathyroid hormone is one of the most
important calcium-regulating hormones in the body. Its principal action in the kidneys is to
increase tubular reabsorption of calcium, especially in the distal tubules and perhaps also in the
loops of Henle. Parathyroid hormone also has other actions, including inhibition of phosphate
reabsorption by the proximal tubule and stimulation of magnesium reabsorption by the loop of
Henle.
Assignment 001:
NEUROTRANSMITTERS
neurons and that allow communication between nerve cells to produce physiological response such
as muscle contraction.
The neuron: The neuron is the structural and functional unit of the nervous system (Figure 1).
Neurons do not divide, they must last for a lifetime. They function by the production, propagation
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The functional components of a neuron consist of:
– The cell body (perikaryon) having the nucleus (karyon) and those organelles that maintain the
cell
– The processes extending from the cell body which consists of axon and dendrites.
• Axon, usually the longest process, which transmits impulses away from the cell body to other
neurons or effector (target) cells such as muscle cells or gland (secretory cells).
• Dendrites, usually the shorter processes that transmit impulses from the periphery (i.e. from
Synapses
A synapse is a site of functional contact between neurons that facilitate transmission of impulses
from one (presynaptic) neuron to another (postsynaptic) neuron or effector (target) cells such as
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muscle and gland cells. Thus, a synapse is a site of neuron-to-neuron or neuron-to-effector cell
communication.
The end of a neuro process is terminated in a bulb-like end called a bouton or presynaptic knob
There is no actual continuity between one neuron and another, a minute gap exists between them.
The space that separates one neuron from another neuron or effector (target) cell, which the
It is a portion of the plasma membrane of the postsynaptic neuron which contains receptor sites
CLASSIFICATION OF NEUROTRANSMITTERS
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Table 1: Classification of most common neurotransmitters and their site of synthesis
Various stimuli (physical, chemical or electrical) activate neurons from their resting state and
cause them to produce nerve impulses. At rest, a neuron maintains a difference in potential (i.e.
voltage) of about –50 to –80 mV between the inside and outside of its surface membrane. Thus the
When a nerve impulse reaches the bouton, the voltage reversal across the membrane produced by
the impulse (called depolarization) causes Ca2+ channels to open in the plasma membrane of the
bouton. The influx of Ca2+ from the extracellular space causes the synaptic vesicles to migrate to,
and fuse with the presynaptic membrane, thereby releasing the neurotransmitter into the synaptic
cleft by exocytosis.
The neurotransmitter then diffuses across the synaptic cleft and binds to specific receptors on the
postsynaptic membrane causing Na+ channels in that membrane to open and allowing Na+ to enter
the neuron. The influx of Na+ causes local depolarization in the postsynaptic membrane and
thereby generating a new action potential or nerve impulse. The release of neurotransmitters by
the presynaptic bouton can cause either excitation or inhibition at postsynaptic membrane.
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Excitatory Neurotransmitters
Excitatory neurotransmitters like acetylcholine and serotonin open cation channels, prompting an
influx of Na+ that causes local depolarization in the postsynaptic membrane. This leads to the
Inhibitory Neurotransmitters
Inhibitory neurotransmitters like GABA open anion channels causing Cl – to enter the cell and
hyperpolarize the postsynaptic membrane, making it even more negative so that generation of an
action potential (i.e. making membrane depolarized) becomes more difficult and inhibit the
Each CNS neuron, in general, receives thousands of synapse, some excitatory and some inhibitory.
Whether a given neuron will generate an impulse or not depends on the summation of the
excitatory and inhibitory transmitters acting upon its surface at any particular time.
When neurotransmitters serve their function, they must be removed from the synaptic space. The
dissociates from its receptors when the local transmitter concentration falls.
The most common process of removal of the neurotransmitter after its release into the synaptic
neurotransmitters are re-incorporated into the presynaptic vesicles by endocytosis and are available
for recycling. About 80% of the released neurotransmitters are removed by this mechanism. The
remaining 20% of the neurotransmitters are degraded by the enzymes associated with the
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degrades norepinephrine. The degradation or reuptake of neurotransmitters is necessary to limit
i. Acetylcholine
axons and striated muscle at the neuromuscular junction (contact made by the terminal branches
of the axon with muscle). Neurons that synthesize and release acetylcholine are termed cholinergic
neurons.
Acetylcholine is synthesized in neuronal cytoplasm from choline and acetyl-CoA through the
action of choline acetyltransferase (Figure 3). Acetylcholine is then incorporated into synaptic
in the mechanism of release of neurotransmitter. The released acetylcholine diffuses rapidly across
the synaptic cleft to its receptors on the postsynaptic membrane (muscle membrane) causing
opening of the Na+ channels in the receptor that permits a flux of cations across the membrane.
The consequent entry of Na+ results in depolarization of the muscle membrane and action potential
generated and transmitted along the fiber, resulting in contraction of the muscle.
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Figure 3: Synthesis and hydrolysis of acetylcholine
(ii) Catecholamines
Synthesis
These neurotransmitters are synthesized from phenylalanine and tyrosine. Tyrosine is produced in
the liver from phenylalanine through the action of phenylalanine hydroxylase. Tyrosine is then
Note that dopamine is a major transmitter in nerves that control voluntary movement. Damage to
these nerves causes Parkinson’s disease which is characterized by tremor and difficulties in
dependent release from synaptic vesicles in response to action potentials. After action, the
catecholamine dissociates from its receptor quickly, causing the duration of the biological response
to be brief.
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Functions of catecholamines
• Catecholamines exhibit peripheral nervous system excitatory and inhibitory effects as well as
– Smooth muscle cells of the vessels that supply blood to the skin and mucous membranes.
Inhibitory effects, by contrast, are exerted upon smooth muscle cells in the wall of the gut, the
bronchial tree of the lungs, and vessels that supply blood to skeletal muscle.
the rate of metabolism by increasing the rate of glycogenolysis and fatty acid mobilization.
• In the periphery, dopamine causes vasodilatation and it is therefore used clinically to stimulate
• Dopamine found in limbic systems of the brain are involved in emotional responses and memory.
Serotonin also called 5-Hydroxytryptamine (5-HT), is derived from tryptophan. Neurons that
Serotonin is stored in vesicles in the axon terminals of these neurons. It undergoes Ca 2+ dependent
The degradation of serotonin results in the formation of 5-hydroxy indole acetic acid (5-HIAA).
This is a useful marker of excess production of serotonin in diseases such as carcinoid syndrome.
Functions
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Serotonin is involved with a wide range of functions such as platelet aggregation, and smooth
muscle contraction, appetite, mood, hormonal balance, sleep/wake cycles, alertness, sexual
GABA is an amino acid derivative and is the most abundant inhibitor in the brain. It balances the
Synthesis
GABA is synthesized from glutamate (Figure 4) and stored in vesicles in axon terminals.
Glutamate decarboxylase is present in many nerve endings of the brain as well as in the β-cells of
the pancreas.
Neurons that secrete GABA are called GABAergic neurons. GABA exerts its effects by binding
to receptors. Binding of GABA to receptors increases the Cl – conductance from outside to inside
Functions of GABA
• GABA contributes to motor control, vision and many other cortical functions. Anxiety is also
regulated by GABA. Some drugs that increase the level of GABA in the brain are used to treat
• GABA also stimulates the anterior pituitary, leading to higher levels of human growth hormone
(HGH) which contributes significantly to muscle growth and also prevents the formation of fat
cells.
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(v) Histamine
Histamine is found mainly in the hypothalamus. It is synthesized from histidine by the reaction
Histamine is released from synaptic vesicles by exocytosis and interacts with its receptors.
There are three classes of histamine receptors denoted H1, H2 and H3.
Functions
•Histamine has been shown to control the release of pituitary hormones and play a role in sleep-
Degradation
affinity Na+ dependent transport system does not exist in brain. In the brain, histamine undergoes
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