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Introduction
• NMR spectroscopy – the preeminent technique for
determining the structure of organic compounds
• An NMR spectrum provides information about
chemical structures that would be difficult if not
impossible, to obtain by any other method
• Measures the interaction of electromagnetic radiation
(radiofrequency) with nuclei (nmr active) in a strong
external magnetic field
• Nuclei (positively charged) are part of atoms that are
in turn assemble into molecules
Characteristics of NMR active Nuclei
NMR active nuclei have either
Even mass number (i.e. number of neutrons and
protons are both odd) e.g. 14N
Odd mass number (i.e. number of neutrons plus
protons is odd) e.g. 1H and 13C
1H and 13C are of importance to organic chemist
This lecture will focus on 1H and 13C
Basic principles of 1H and 13C NMR
• Nuclear spins are oriented randomly in the absence of an external
magnetic field but have a specific orientation in the presence of
an external field, B0
Some aligned parallel to the external field (Lower energy
orientation)
Some aligned antiparallel to the external field (Higher energy
orientation)
• (2) Resonance lines are split by neighboring protons and the multiplicity of the split is
determined by the number of protons. The signal of a proton that has n equivalent
neighboring protons is split into a multiplet of n+1 peaks.
• (3) The relative intensities of the peaks and multiplicity can be directly determined from
Pascal's triangle.
• (4) The distances between the split lines are equal and correspond to the coupling
constant between the coupled nuclei.
• (5)Protons that are farther than two carbon atoms apart do not
usually couple
• Appears in the same format as the COSY experiment –1H spectra on axes and a
diagonal
• Rather than coupling through bonds NOESY spectra show coupling through space
• Couplings are related to how close one proton is to another
• A proton that is close in space to the irradiated proton is affected by NOE whether
or not it is coupled to the irradiated protons.
• NOE operates through the bonds as well as through the space.
• NOE application determines the correct stereochemistry of the compounds
HETERONUCLEAR CORRELATION
SPECTROSCOPY
• one-bond interactions between the C and H nuclei
• 1 bond 1H-13C correlation spectroscopy
•Drug design
•Medicine -MRI
Worked Example
Assigning a Chemical Structure from a 1H NMR Spectrum
• D. C4H6Cl2
• 3H,s at 2.18
• 2H,d at 4.16 J=7Hz
• 1H,t at 5.71 J= 7Hz
• A C9H18O compound has a strong infrared absorption at 1710 cm-1. Its
1
H NMR spectrum has a single sharp peak (a singlet) at δ 1.2 ppm. Its
13
C NMR spectrum shows three lines at δ210, 45 and 25 ppm. Suggest
a structure for this compound.
MASS SPECTROMETRY(MS)
• Mass spectrometry(MS) is a technique for studying the masses of
molecules separated according to their mass to charge ratio
• Block Diagram
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BASIC PRINCIPLES OF ELECTRON
IMPACT MS
• The commonest MS is electron impact
• organic molecules are bombarded with high energy
electrons and converted to highly energetic positively
charged ions (molecular ions or parent ions),
• An electron is dislodged from the molecule producing
a positive molecular ion
•
• Molecular ion can break up into smaller ions
(fragment ions, or daughter ions)
• The molecular ions and the fragment ions are separated by deflection
in a magnetic field according to their mass and charge and generate a
current (the ion current) at the collector in proportion to their relative
abundances.
• The lower the mass the more easily is the ion deflected in the
magnetic field.
• A plot of relative abundance against the ratio mass/charge (the m/z
value) is called mass spectrum .
• The intensity of the peak describe the relative abundance of a
particular ion.
• The most intense peak in the MS is called the base peak and is assign
a value of 100%
• The peak formed by loss of one electron from the molecule is called
molecular ion or parent ion
• Any peaks of less mass than the molecular ion is called fragment peak
Sample Introduction
• Direct injection into the ionisation source
• Sample may undergo some type of chromatography en route to the
ionisation source
High pressure liquid chromatography (HPLC)
Gas chromatography (GC)
Capillary electrophoresis (CE)
Method for sample ionisation
• Ionization can be accomplished in several ways.
• The most common method is electron impact,
• This bombards the vaporized molecules with a beam of high-energy
electrons about 70 eV
• Most organic molecules form molecular ions when the energy of the
electron beam reaches 10-15 eV .
• fragmentation of the molecular ion reaches substantial proportions at 70
eV
• This technique is applicable to all volatile compounds and give
reproducible mass with fragmentation to give structural information
ALTERNATIVES TO ELECTRON-
IMPACT IONIZATION
• Chemical ionization
• This is carried out by mixing the sample with a reactant gas and
subjecting this mixture to electron bombardment.
• The reactant gas most commonly used is methane, although other
gases such as ammonia or isobutane have also been used:
• on electron impact, the methane is ionized not the sample
• The CH5+ and C2H5+ ions then react with sample molecules,
inducing them to ionize, and these ions are separated magnetically
and electrostatically in the normal way.
• In chemical ionization, the actual molecular ion is not obtained but
there exist a quassi molcular ion is observed through acceptance of
proton or abstraction of hydride
advantages of chemical ionization
• (a) more abundant peaks related to the molecular ion,
• (b) simpler fragmentation patterns
• (c) easy application of gas chromatography-mass spectrometry
interfacing, since methane can be used not only as reactant gas (in
the chemical ionization), but also as the carrier gas in the gas
chromatograph
Other soft ionization methods
• Field ionization / field desorption
• Laser ionization mass analysis (LIMA)
• Plasma desorption (PD)
• Fast atom bombardment
• Matrix assisted laser desorption ionisation (MALDI)
• Electron spray ionisation
Molecular ion
• This provides the molecular mass of the analyte and is the first clue
used to interprete MS
• The mass of the molecular ion is based on the mass of most abundant
isotopes for each element in the molecule eg molecular ion of CHBr3
is observed at M/z at 250 not the Mwt of 253
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Characteristic of Molecular ion
• It must be the ion of highest mass in the spectrum
• The m/z value must correspond to a reasonable molecular formula
with proper isotopes abundance
• It must be capable of yielding the important ions in the high mass
region of the spectrum through the loss of logical neutral species
• Most compounds have an even molecular mass, The one common
exception is the Nitrogen rule
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Nitrogen rule
• Any compound with odd number of nitrogen atoms will have an odd
molecular mass.
• Any compound with even number nitrogen atoms will have an even
number molecular mass
• This is because nitrogen is the only common atom where the most
common isotopes has an odd valence and even mass isotopes
• CH4 16, NH3 17 , N2H4 32
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Fragmentation at Functional Groups
– Retro Diels-Alder
–McLafferty rearrangement
need g-hydrogens
FRAGMENTATIONS ASSOCIATED WITH
FUNCTIONAL GROUPS
ALKANES AND ALKANE GROUPS
• The molecular ion will normally be seen in the mass spectra of the
lower n-alkanes, but its intensity decreased with increased size and
branching of the chain.
• Group peaks spaced by 14 au apart due to loss of CH2
(1) Cleavage at Branch Points.
• Branched-chain alkanes rupture predominantly at the branching points, and the
largest group attached to the branching point is often preferentially expelled as a
radical.
• The preference is for the formation of tertiary over secondary over primary cations.
• in the mass spectrum of 2,2-dimethylpentane
• (a) no molecular ion peak,
• (b) substantial peaks for C3H7+, C4H9+
• (c) a much higher abundance of C5H11 +
• (d) a reasonable peak for C6H13+ due to M - CH3.
• peaks would be observed at m/e =85 and m/e = 57
CYCLOALKANES
• for the simple members the molecular ion peak will be
easily seen, its intensity reducing as branching
increases.
• The most significant mode of cleavage invoves the loss
of ethene from the parent molcule
• Saturated rings or cyclic hydrocarbons lose alkyl side
chain α- to the ring to form a radical and a charge will
be localised to the ring carbon leading to a base peak.
• There could also be the splitting off of the side-chains
• M/Z= 83
ALKENES AND ALKENE GROUPS