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Add a warning for samtools fastq on coordinate sorted data. Windows/MinGW-W64 CI #189: Pull request #2176 opened by jkbonfield
January 23, 2025 16:50 6m 11s jkbonfield:fix_2169
jkbonfield:fix_2169
January 23, 2025 16:50 6m 11s
Add multi-threading to samtools consensus. Needs htslib#1875 Windows/MinGW-W64 CI #188: Pull request #2174 synchronize by jkbonfield
January 21, 2025 17:36 6m 45s jkbonfield:region-walk
jkbonfield:region-walk
January 21, 2025 17:36 6m 45s
Add multi-threading to samtools consensus. Needs htslib#1875 Windows/MinGW-W64 CI #187: Pull request #2174 synchronize by jkbonfield
January 21, 2025 10:36 6m 38s jkbonfield:region-walk
jkbonfield:region-walk
January 21, 2025 10:36 6m 38s
Add multi-threading to samtools consensus. Needs htslib#1875 Windows/MinGW-W64 CI #186: Pull request #2174 synchronize by jkbonfield
January 21, 2025 10:29 2m 19s jkbonfield:region-walk
jkbonfield:region-walk
January 21, 2025 10:29 2m 19s
Add multi-threading to samtools consensus. Needs htslib#1875 Windows/MinGW-W64 CI #185: Pull request #2174 synchronize by jkbonfield
January 20, 2025 17:00 6m 35s jkbonfield:region-walk
jkbonfield:region-walk
January 20, 2025 17:00 6m 35s
Add multi-threading to samtools consensus. Needs htslib#1875 Windows/MinGW-W64 CI #184: Pull request #2174 synchronize by jkbonfield
January 20, 2025 16:51 2m 15s jkbonfield:region-walk
jkbonfield:region-walk
January 20, 2025 16:51 2m 15s
Add multi-threading to samtools consensus. Needs htslib#1875 Windows/MinGW-W64 CI #183: Pull request #2174 synchronize by jkbonfield
January 20, 2025 16:48 6m 38s jkbonfield:region-walk
jkbonfield:region-walk
January 20, 2025 16:48 6m 38s
Add multi-threading to samtools consensus. Needs htslib#1875 Windows/MinGW-W64 CI #182: Pull request #2174 synchronize by jkbonfield
January 20, 2025 16:47 6m 29s jkbonfield:region-walk
jkbonfield:region-walk
January 20, 2025 16:47 6m 29s
Add multi-threading to samtools consensus. Needs htslib#1875 Windows/MinGW-W64 CI #181: Pull request #2174 synchronize by jkbonfield
January 20, 2025 16:38 6m 6s jkbonfield:region-walk
jkbonfield:region-walk
January 20, 2025 16:38 6m 6s
Add multi-threading to samtools consensus. Needs htslib#1875 Windows/MinGW-W64 CI #180: Pull request #2174 opened by jkbonfield
January 20, 2025 16:35 2m 6s jkbonfield:region-walk
jkbonfield:region-walk
January 20, 2025 16:35 2m 6s
Fix depth counts when overlap removal is enabled Windows/MinGW-W64 CI #179: Commit 8e556d2 pushed by jkbonfield
January 20, 2025 12:09 6m 22s develop
develop
January 20, 2025 12:09 6m 22s
sets sort order as unsorted when ordering is lost during merge Windows/MinGW-W64 CI #178: Pull request #2173 opened by vasudeva8
January 20, 2025 11:30 6m 16s vasudeva8:mrg
vasudeva8:mrg
January 20, 2025 11:30 6m 16s
Make reheader -h use /tmp and honour TMPDIR. Windows/MinGW-W64 CI #177: Commit b090259 pushed by whitwham
January 17, 2025 16:19 6m 31s develop
develop
January 17, 2025 16:19 6m 31s
Fix depth counts when overlap removal is enabled Windows/MinGW-W64 CI #176: Pull request #2171 opened by daviesrob
January 17, 2025 16:13 6m 27s daviesrob:depth-overlap-fix
daviesrob:depth-overlap-fix
January 17, 2025 16:13 6m 27s
Make reheader -h use /tmp and honour TMPDIR. Windows/MinGW-W64 CI #175: Pull request #2168 opened by jkbonfield
January 16, 2025 10:45 6m 27s jkbonfield:fix_2165
jkbonfield:fix_2165
January 16, 2025 10:45 6m 27s
Update samtools-merge.1 to include --template-coordinate (#2164) Windows/MinGW-W64 CI #174: Commit a993922 pushed by daviesrob
January 15, 2025 11:48 6m 13s develop
develop
January 15, 2025 11:48 6m 13s
Add samtools consensus -T ref.fa functionality. (#2153) Windows/MinGW-W64 CI #173: Commit c9edc17 pushed by vasudeva8
January 13, 2025 11:26 6m 24s develop
develop
January 13, 2025 11:26 6m 24s
Add samtools consensus -T ref.fa functionality. Windows/MinGW-W64 CI #172: Pull request #2153 synchronize by jkbonfield
January 13, 2025 10:22 6m 5s jkbonfield:consensus-ref
jkbonfield:consensus-ref
January 13, 2025 10:22 6m 5s
Add samtools consensus -T ref.fa functionality. Windows/MinGW-W64 CI #171: Pull request #2153 synchronize by jkbonfield
January 13, 2025 10:03 6m 22s jkbonfield:consensus-ref
jkbonfield:consensus-ref
January 13, 2025 10:03 6m 22s
Update samtools-merge.1 to include --template-coordinate Windows/MinGW-W64 CI #170: Pull request #2164 synchronize by daviesrob
January 9, 2025 15:10 6m 13s nh13:patch-1
nh13:patch-1
January 9, 2025 15:10 6m 13s
Update samtools-merge.1 to include --template-coordinate Windows/MinGW-W64 CI #169: Pull request #2164 opened by nh13
January 7, 2025 17:55 6m 23s nh13:patch-1
nh13:patch-1
January 7, 2025 17:55 6m 23s
Windows/MinGW-W64 CI Windows/MinGW-W64 CI #168: by daviesrob
January 7, 2025 15:27 6m 39s develop
develop
January 7, 2025 15:27 6m 39s
cat man page update (for #2160) Windows/MinGW-W64 CI #167: Pull request #2162 synchronize by vasudeva8
January 7, 2025 11:51 6m 31s vasudeva8:cat
vasudeva8:cat
January 7, 2025 11:51 6m 31s
cat man page update (for #2160) Windows/MinGW-W64 CI #166: Pull request #2162 opened by vasudeva8
December 24, 2024 15:13 6m 23s vasudeva8:cat
vasudeva8:cat
December 24, 2024 15:13 6m 23s
Address comments in review. Windows/MinGW-W64 CI #165: Commit 4f3a739 pushed by daviesrob
December 12, 2024 16:49 6m 29s develop
develop
December 12, 2024 16:49 6m 29s
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