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Update samtools-merge.1 to include --template-coordinate #2164

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merged 2 commits into from
Jan 15, 2025

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@nh13 nh13 commented Jan 7, 2025

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@daviesrob daviesrob self-assigned this Jan 9, 2025
Move the --template-coordinate option to under '-t' so the
oredr-related options are closer together.
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Strictly this should be .B as there's no argument so the I in .BI isn't needed...

This option might be better placed after -t so the ordering-based options are closer together. It should also be mentioned in the "The ordering of the records in the input files must match..." paragraph.

I'll push a commit here to make the changes above. There are some other improvements that could be made (e.g. moving -o) but they may be better done separately.

@daviesrob daviesrob merged commit a993922 into samtools:develop Jan 15, 2025
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