Genomic interval operations on Pandas DataFrames

Publication quality NGS track plotting

WisecondorX — An evolved WISECONDOR

SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances

is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

HemTools: a collection of NGS pipelines and bioinformatic analyses

A comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform

生物信息学项目实践仓库🏆🥇

PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.

Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researchers from wet and dry lab to perform downstream Bioinformatics analysis

Metagenomic pipeline and other general scripts used in the lab.

This RNAseq data analysis tutorial is created for educational purpose

Flexible analysis of high-content CRISPR screening

Project Manager for NGS data analysis

GitHub for the SIB courses NGS - Genome variant analysis

R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)

RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.

A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis

Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clusters of single cells, harmonize labels across single cell datasets to generate a unified atlas and infer relationship among celltypes between two datasets. It uses an ensemble of three machine learning classif…

TransfoRNA: Navigating the Uncertainties of Small RNA Annotation with an Adaptive Machine Learning Strategy