Showing : heatmaps • reset
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DESeq2 Heatmap
heatmaps
updated 10 hours ago by 67k • written 10 hours ago by • 0
0
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3
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479
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Label specific rows in pheatmap
heatmaps pheatmap
updated 12 weeks ago by 67k • written 12 weeks ago by ▴ 50
1
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5
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1.2k
views
Heatmap from the output of GSEA clusterProfiler?
clusterProfiler heatmaps
written 4 months ago by • 0
2
votes
1
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629
views
DESeq2 is it OK to scale transformed data in order to plot heatmaps?
DESeq2 heatmaps
updated 5 months ago by ★ 4.6k • written 5 months ago by • 0
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0
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244
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Error in drawHeatmap function
GeneOverlap heatmaps
7 months ago Johanna • 0
0
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2
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725
views
Cluster columns in Pheatmap
geneexp pheatmap heatmaps cluster
updated 7 months ago by 67k • written 7 months ago by • 0
0
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1
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1.7k
views
Error when trying to create a heatmap with DESeq2
Heatmap RNA-seqanalysis heatmaps DESeq2
updated 14 months ago by ▴ 780 • written 14 months ago by • 0
0
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1
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1.9k
views
edgeR heatmap construction and interpretation
heatmaps
updated 15 months ago by 52k • written 15 months ago by • 0
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3
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986
views
Installing Gpart
gpart heat heatmaps
updated 15 months ago by 67k • written 15 months ago by • 0
0
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2
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986
views
Drawing a heatmap with only limited genes
heatmaps
updated 18 months ago by • 0 • written 19 months ago by • 0
1
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1
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712
views
Add 'ColSideColors' using 'heatmap.2' function
ColSideColors heatmaps heatmap.2
updated 21 months ago by ▴ 80 • written 22 months ago by ▴ 10
0
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1
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899
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Heatmap of two conditions from the normalized gene count data
GeneExpression heatmaps
updated 22 months ago by ★ 4.6k • written 22 months ago by • 0
0
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2
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1.3k
views
How to use the plotExprHeatmap function to draw heat maps according to groups
grou heatmaps CyTOFpower cytofWorkflow
22 months ago shuangshuang • 0
0
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0
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1.2k
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
23 months ago gianni.drm • 0
0
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1
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921
views
struggling to create a heatmap
DESeq2 heatmaps
updated 23 months ago by ★ 4.6k • written 23 months ago by ▴ 10
2
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3
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1.5k
views
How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma heatmaps ComplexHeatmap
updated 23 months ago by ▴ 40 • written 24 months ago by ▴ 10
2
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2
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902
views
[DESeq2] There is no difference in expression in my heatmap
DESeq2 heatmaps
24 months ago Sooni ▴ 10
4
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5
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5.0k
views
How to identify top most variable genes from log2 normalized data?
supervised edgeR variance RNASeq heatmaps
updated 23 months ago by 52k • written 2.1 years ago by ▴ 10
2
votes
5
replies
2.2k
views
ComplexHeatmap - z-score color coding failed
heatmaps ComplexHeatmap
2.1 years ago Katharina • 0
0
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1
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3.4k
views
Heatmap with result DESeq analysis
DESeq2 results Heatmaps plots
updated 2.2 years ago by 43k • written 2.3 years ago by • 0
0
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3
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1.7k
views
Generate Heatmap from Gene Names after DESEQ2
DESeq2 DESEQ2 tximeta SummarizedExperiment heatmaps
updated 2.3 years ago by 67k • written 2.3 years ago by • 0
0
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1
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2.0k
views
Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R heatmaps ComplexHeatmap Heatma
updated 2.4 years ago by ▴ 290 • written 2.4 years ago by • 0
1
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1
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1.3k
views
How fix lines of dendrogram that overlap in the column portion of a heatmap?
heat heatmaps
updated 2.5 years ago by 67k • written 2.6 years ago by • 0
0
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2
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5.8k
views
Scaling for p.heatmap
heatmaps pheatmap scaling
2.6 years ago Bhavana • 0
0
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3
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1.6k
views
Persisting error in making a heatmap
heatmaps gplots
2.6 years ago beslinail • 0
1
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1
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1.0k
views
Method for generating heatmap of overlapping DEGs?
heatm heatmaps
updated 2.7 years ago by 67k • written 2.7 years ago by • 0
0
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1
reply
1.4k
views
Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 3.4 years ago by ▴ 40 • written 3.4 years ago by • 0
0
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2
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2.0k
views
PCA and heatmaps: most variable genes selection
DESeq2 ExpressionData heatmaps pca
3.6 years ago Clara ▴ 10
0
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1
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3.0k
views
Can you colour dendrogram branch clusters in pheatmap?
R heatmaps pheatmap
updated 3.9 years ago by ★ 4.0k • written 3.9 years ago by ▴ 10
1
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1
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1.1k
views
PCA rand heatmap of raw data
DESeq2 DiffSeq PrincipalComponent rlog heatmaps
updated 3.9 years ago by 43k • written 3.9 years ago by ▴ 30
4
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5
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1.7k
views
DEseq2 results
heatmaps DEGs PCA
updated 3.9 years ago by ★ 4.0k • written 3.9 years ago by • 0
0
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0
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882
views
How to generate input file for Bioconductor package heatmaps
heatmaps input file
updated 5.9 years ago by 67k • written 5.9 years ago by ▴ 10
32 results • Page 1 of 1
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Comment: Differential variability modelling with vst() expression by convincing.shark.jqvy • 0
Your approach to differential variability modeling using vst() looks promising! It mirrors the challenge of mastering levels in [Geometry D…
Answer: DESeq2 Heatmap by James W. MacDonald 67k
Two things. First, `scale` is already vectorized, so you don't have to use `apply`. You can instead just do `t(scale(t(mat)))` . Second, th…
Answer: Improve performance of qusage aggregateGeneSet by James W. MacDonald 67k
This support site is meant mostly to help people with questions about using Bioconductor packages rather than posting code improvements. I …
Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000 by James W. MacDonald 67k
If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…
Comment: org.Hs.eg.db issue by k.panov • 0
installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(
Votes
Comment: DESeq2 for single cell pseudobulk processing
C: Limma: how to get same output as topTable but for all the genes ?
A: Processing agilent data by limma
A: Linear regression in DESeq2
Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?
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