Biophysical Chemistry Spring 2010: Course Resources

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Biophysical Chemistry Spring 2010

JHS 309 MWF 9:40-10:40 PM

Dr. Glazier Office Hours


JHS 317  Tuesday & Thursday 10:45 – 11:45 AM
229-5855  W, R or F to be arranged
sglazier@stlawu.edu  By appointment

Course Resources
1. Thomas Engel & Philip Reid. Thermodynamics, Statistical Thermodynamics &
Kinetics, 2nd ed. Pearson Education Inc., San Francisco CA, 2008.
2. Lectures, exam keys, grades, and other course materials:
http://angel.stlawu.edu/angel
3. Library resources for projects: http://sciencelibrary.stlawu.edu - CHEMISTRY

Grading
Includes attendance, engagement and useful contributions
Course Citizenship 5% to the task at hand.
Problems (9) 15% Three each: Discussion, written and on-line.
Exams (4) 50% One hour in-class.
Project (1) 10% Current topics in biophysical chemistry.
Comprehensive. You may substitute your final exam grade
Final 20% for your lowest exam grade.
No make-up problems or exams will be given except for university sponsored events or excuses
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approved by the Dean of Students’ office. There is a 10% penalty per day for late work.
Grade Range (%) Grade Range (%)
4.00 93-100 2.25 75-76.9 The mean final grade will usually
3.75 91-92.9 2.00 72-74.9 correspond to a 2.9. If you
3.50 88-90.9 1.75 70-71.9 collectively all do an outstanding
3.25 86-87.9 1.50 67-69.9 job, then you will be rewarded by
3.00 83-85.9 1.25 65-66.9 the mean corresponding to a higher
2.75 81-82.9 1.00 60-64.9 grade. This happens in about one
2.50 77-80.9 0.00 < 60 third of classes.
Tentative Course Schedule
Date Chapter: Topic
Januar
y Properties of Gases
18th 1, 7.1 – 7.2: Equations of state
25th 2: 1st law, internal energy, heat, and work
February
1st 2: Heat capacity and enthalpy
5.1 – 5.8: 2nd law and entropy
8th Exam 1 Friday 2/12/10 Chapters 1 – 2
Reactions of Gases
15th 6: Equilibrium and Gibbs energy
nd
22 16: Kinetic theory of gases
March
18.13 – 18.14: Reactive collisions
1st Exam 2 Friday 3/5/10 Chapters 5, 6 & 16

8th
15th 18.1 – 18.5: Rate laws & reaction
22nd 19.1, 19.5, 19.7: Radical-chain reactions
19.8: Photochemistry
29th Exam 3 Friday 4/2/10 Chapters 18 – 19
April Properties of Solutions
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5th 8.1 – 8.6.: Phase changes


12th 9.1 – 9.13: Ideal & real
Reactions in Solution
11: Electrochemistry, batteries and fuel cells
19th Exam 4 Friday 4/23/10 Chapters 8 – 9
19: Enzyme kinetics Last day of classes on
th
26 Friday
May
3rd Comprehensive Final Exam Tuesday 5/4/10 8:30 – 11:30 AM

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Course Expectations
Productivity
I want to make the most of our three hours of guaranteed biophysical chemistry time.
Productivity in class is governed by the character of individual preparation and
engagement. To prepare for each class, complete homework covering material from
our previous meeting and skim the new reading assignment working examples as you
go. Come to each class ready to learn and contribute.

Homework
 Advice – “The middle of every successful project looks like a disaster.”
     - Rosabeth Moss
Cantor
Problems sets will be give for each chapter to reinforce material covered in class
and help you prepare for exams. I encourage you to form study groups to work on
homework and to prepare for exams. If you find a particular type of problem
difficult, find unassigned problems of that type to practice. Chemistry is learned
by doing – make mistakes, discuss different approaches (right and wrong ones),
play, and stay current. You will be asked to explain your reasoning and points of
uncertainty during lecture – be ready.

 Motivation – “Genius is seldom recognized for what it is: a great capacity for hard
work.” - Henry Ford, 1863 – 1947
Two semesters of exam and homework grades are posted on Angel as evidence
that high quality homework corresponds to high exam grades. If you come across
a good problem from your research or studies that you’d like to see on a
homework or exam, send me a copy and I may use it.

Academic Integrity
We are privileged to have the opportunity to devote ourselves to the simple task of
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scholarship and I expect students to acknowledge the fragile foundation of privilege


by complying with the University’s academic honor code. Damaging the integrity of
your education is offensive to your professor, peers and society at large, all of whom
rely on your potential to contribute now and in the future. Talk to me if you
encounter a grey area. http://www.stlawu.edu/acadaffairs/academicintegrity.htm
Project
Rationale
St. Lawrence University is one of a number of colleges offering a course in biophysical
chemistry to comply with guidelines from the American Chemical Society (ACS). The
ACS has increased the amount of biochemistry content required for chemistry majors
in response to a boom in bio-related research. The project for this course has three
goals: 1) Co-discover progress in the field of biophysical chemistry by reviewing
current literature in peer-reviewed journals; 2) Publish a journal of our own that
reflects our classes’ interests and unique character; and 3) Encourage collaboration
between chemists and biochemists.

Assignment
Design a project the meets the three goals listed above by publishing a journal of
biophysical chemistry as seen by our class. The contents of the journal should relate
to topics from class and be written so that our journal’s audience is interested and
learns about current topics in biophysical chemistry. The project will be completed in
four steps: 1) Organizational meeting; 2) Approval of job assignments and task list; 3)
Rough printing; and 4) Final publication and dissemination.

"Now, in the second law of thermodynamics..."


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