Practical Botany Notes
Practical Botany Notes
Practical Botany Notes
Course :
ALGAE , BRYOPHYTES , FUNGI , PLANT
PATHOLOGY AND LICHENS
Course Code: 19UPBT302P
BY
Dr. E. Gayathiri
GLOSSARY
ALGAE 2
Nostoc
Chara
Navicula
Kappaphycus
Sargassum
Coleocheate
BRYOPHYTES
Riccia
Anthoceros
Polytrichum
FUNGI
Pythium
Mucor
Aspergillus
Puccinia
Cercospora
PLANT PATHOLOGY 3
Little Leaf of Brinjal
Bacterial Disease – Citrus canker
Bunchy Top of Banana
Fungal Disease – Red Rot of Sugarcane
LICHENS
Usnea
Apothecium
COMPOUND MICROSCOPE
4
A compound microscope is an instrument that is used to view magnified images of small objects on a glass slide. It can
achieve higher levels of magnification than stereo or other low power microscopes and reduce chromatic aberration.
The characteristics of a compound microscope
Two or more convex lenses
Typical magnification range between 40x and 1000x
One objective is used at a time
Two-dimensional images
PARTS OF THE COMPOUND MICROSCOPE
•Eyepiece (ocular lens) with or without Pointer: The part that is looked through at the top of the compound microscope
•Arm: Supports the microscope head and attaches it to the base.
•Nosepiece: Holds the objective lenses & attaches them to the microscope head..
•Base: Bottom base of the microscope that houses the illumination & supports the compound microscope.
•Objective lenses: There are usually 3-5 optical lens objectives on a compound microscope each with different magnification
levels.
•Specimen or slide: The object used to hold the specimen in place along with slide covers for viewing
•Stage or Platform: The platform upon which the specimen or slide are placed.
•Stage clips or mechanical stage: Clips on the stage that hold the slide in place on the mechanical stage.
•Coarse and fine adjustment controls: Adjusts the focus of the microscope.
COMPOUND MICROSCOPE 5
NOSTOC 6
Kingdom : Plantae
Sub Kingdom :Cryptogams
Division :Thallophyta
SubDivision : Algae
Class :Cyanophyceae
Genus : Nostoc sp.
NOSTOC
NOSTOC WAS A COLONIAL FILAMENTOUS ALGA FOUND IN THE FORM OF BLUISH
7
GREEN SMALL BALL IN ITS NATURAL HABITAT. IT WAS SLIPPERY AND SHINY STRUCTURE
ALSO CALLED MOONSPIT OR STAR JELLY.
Division Chlorophyta
Class Chlorophyceae
Order Charales
Family Characeae
Genus Chara
Chara
Morphological Features of Chara 10
Chara is a fresh water, green alga found submerged in shallow water ponds,
tanks, lakes and slow running water.
Chara is found mostly in hard fresh water, rich in organic matter, calcium and
deficient in oxygen.
Chara plants are often encrusted with calcium carbonate and hence are
commonly called stone wort.
The thallus of Chara is branched, multicellular and macroscopic. The thallus is
normally 20-30 cm. in height but often may be up to 90 cm to l m.
The thallus is mainly differentiated into rhizoids and main axis.
The rhizoids are white, thread like, multicellular, uniseriate and branched
structures. The rhizoids are characterized by presence of oblique septa.
The main axis is erect, long, branched and differentiated into nodes and
internodes.
The main axes bear whorls of branches in a superficial resemblance to Equisetum
(a vascular plant).
They are typically anchored to the littoral substrate by means of branching
underground rhizoids. Chara plants are rough to the touch because of deposited
calcium salts on the cell wall. The metabolic processes associated with this
deposition often give Chara plants a distinctive and unpleasant smell of
hydrogen sulphide.
CHARA 11
T.S. OF INTERNODAL CELL - CHARA
12
In the center is a large central, axial or internodal cell
It is surrounded by corticating threads on all sides
Internodal cell shows a typical cell structure
Center of the cell has a big vacuole surrounded by cytoplasm
In the cytoplasm lies a single nucleus held by thin and delicate
cytoplasmic strands.
Many discoid chloroplast without pyrenoids are scattered in the
pheripheral cytoplasm
The cell has an outermost , thick and frim cell wall .
T.S. OF INTERNODAL CELL - 13
CHARA
14
NAVICULA
Class: Bacillariophyceae
Order: Naviculales
Family: Naviculaceae
Genus: Navicula
NAVICULA 15
It is freshwater alga which is commonly found in ponds and rivers usually
free floating with other algae. It is found in the marshy and stagnant
water
Cells of Navicula are solitary, motile and are in boat shaped. At the
central nodule, which is a solid internal thickening of the wall, the two
over lying (external and internal) fissures of the raphe approaching from
either pole bare connected by a loop like, somewhat sinuous canal .
Raphe is present in both the side of valve which bears three
enlargement or nodules, one central nodules and two polar nodules.
Raphe is responsible for the gliding movement in Navicula.
It has two chloroplast at each side of raphe each with single rod-
shaped pyrenoids (can be view only through girdle view). The cell wall
along with plasma membrane encloses cell protoplast which is further
differentiated into a single nucleus and cytoplasm.
The cytoplasm encloses nucleus which is centrally located and two
large vacuoles. They undergo asexual reproduction in favorable
condition and sexual reproduction which is very rare.
NAVICULA 16
KAPPAPHYCUS 17
Division : Rhodophyta
Class: Rhodophyceae
Order: Gigartinales
Family: Soliriaceae
Kappaphycus 18
Sub-division Algae
Class Phaeophyceae
Order Fucales
Family Sargassaceae
Genus Sargassum
SARGASSUM- THALLUS21
External
1.Thallus is erect,features of Sargassum
thalloid and branched.
22
2. It remains attached to the substratum by a discoid holdfast.
thallus:-
3. Main axis stands out from the holdfast. It varies from a few to many
centimeters in height.
4. Main axis bears large number of primary laterals forming a larger part of
vegetative structure. Branches are radially symmetrical and spirally
arranged.
5. Secondary branches are repeatedly branched.
6. Many branches are flattened along the plane of branching into leaf-like
structures called 'leaves'.
7. Leaves are narrow and their margins are mostly serrate.
8. A few species also show a clear mid-rib. In the lower parts, leaves are
replaced by air bladders. However, leaf or its part is modified almost at any
place into an air bladder.
9. Leaves show minute pores on both of the surfaces which are ostioles (or
openings) of conceptacles (sterile) or cryptostomata or cryptoblasts.
10. In the axils of foliaceous branches (leaves) is situated a series of
repeatedly branched receptacles which bear reproductive structures.
T.S. OF AXIS – SARGASSUM 23
Internal structure of Sargassum axis.
24
The section is almost circular in outline.
2. It is differentiated into three regions : (i) meristoderm, (ii) cortex and (iii)
medulla.
3. Meristoderm is the outermost single celled layer of meristematic cells. It
consists of many, small and compactly placed cells covered by mucilage.
Cells are rich in chromatophores and reserve food material.
4. Cells of the meristoderm are photosynth.etically active and, therefore,
constitute assimilatory region. S. Cortex forms the major part of the axis.
5.Cells are narrow and elongated with many intercellular spaces. Cells
possess large amount of reserve food material. This region is also known as
storage region.
6. Medulla occupies the central part of the axis. It consists of narrow,
elongated and doublewalled cells, inner wall being thin than the outer.
7. The medulla transports water and essential nutrients. Hence, it is a also
called as conducting region.
T.S. OF LEAF – SARGASSUM 25
Internal structure of 26
Sargassum Leaf.
1.T.s. of leaf shows 3 regions similar to those found in axis. These are-meristoderm, cortex and medulla.
2. Meristoderm is the outermost layer. Cells are small, compactly arranged and
rich m chromatophores and reserve food.
3. Cortex is a major part of the tissues. Cells are thin and contain large amount of
reserve food material.
4. Medulla occurs only in central region of the leaf indicating mid-rib. It is absent
from the wings.
5. In the leaf many sterile conceptac1es are distributed on both of its surfaces
(also known as cryptostomata or cryptoblasts).
6. Each cryptoblat opens to the exterior by an opening--{)stiole (visible externally
as black dots or pores).
7.Below an ostiole is situated a flask-shaped cavity--conceptacle. The wall of this
cavity is lined by cells.
8. The floor of the wall bears many multicellular and unbranched hair called
paraphyses. These protrude outside through an ostiole.
9. Thickness of the leaf is maximum in the midrib region and decreases toward
the wings.
Sargassum- Male 27
Conceptacle
Internal structure of Sargassum 28
Male
Conceptacle.
1. Plants may be monoecious or dioecious.
2. Antheridia are found in male conceptacles.
3. Conceptacles occur only in specialized branch system called receptacle
or receptacular branch.
4. Male conceptacles are externally smooth.
5. Many conceptacles are found in a male receptacular branch.
6. Each conceptacle is a flask-shaped cavity opening by a pore called
ostiole.
7. Wall of the conceptacle is made of small and flat cells rich in
chromatophores.
8. Numerous multicellular hairs arising from near the ostiole project outside.
These are called periphyses.
9. Other types of multicellular hairs arising from the floor of the cavity are
called paraphyses.
10. Some of paraphyses are branched and hold one or more antheridia at
the tips of the branches.
11. Each antheridium has a thick wall made of two layers.
12. On maturity about 64 biflagellate antherozoids are produced.
Internal structure of 29
Sargassum Female
Conceptacle.
Coleocheate 30
Division: Charophyta
Class: Coleochaetophyceae
Order: Coleochaetales
Family: Coleochaetaceae
Genus: Coleochaete
Thallus is multicellular and heterotrichous
31
It is either a disc like structure in majority of the species (c. scutata)or
cushionoid or filamentous (c.pulvinata)in others
The thallus is disc like the disc represents only the prostrate system while
a few setae or hair , represent erect system
Filamentous thallus exhibit typical heterotrichous habit with a branched
prostrate system and a branched projecting (erect) system
In both the cases a few cells possess a cytoplasmic outgrowth – setae.
Setae are surrounded partly or wholly by a gelatinous sheath at the
base
The thallus is distinctly enveloped by a gelatinous sheath or mucilage
In discoid species cells of the thallus are joined end to end to form
branches . These branches are laterally apposed to one another to form
a pseudoparenchymatous disc
Each cell is uninucleate.it has a single , large laminate and parietal
chloroplast with a single pyrenoid.
Rest parts of the cell is occupied by the cytoplasm
DISCOID THALLUS – 32
COLEOCHEATE
Riccia 33
Division Bryophyta
Class Hepaticopsida
Order Marchantiales
Family Ricciaceae
Genus Riccia
Internal structure of 34
Sargassum Female
Conceptacle.
1. The plants may be monoecious or dioecious.
2. Oogonia are found in female conceptacles.
3. Conceptacles occur only in specialized branch system called receptacle or receptacular
branch.
4. The female receptacular branch is spinous.
5. It bears many female conceptacles.
6. Conceptacle is a flask-shaped cavity opening by a pore called ostiole.
7. Many multicellular, unbranched hairs arising from near the ostiole called periphyses protrude
outside.
8. The wall of the conceptacle is lined by small and flat cells, rich in chromatophores.
9. A few multicellular, unbranched hairs arise from the floor of the cavity and are called
paraphyses.
l0. Numerous oogonia arise directly from the wall of the conceptacle.
11. Oogonium is sessile or shortly stalked (most of the stalk cell being embedded in the wall).
12. Each oogonium is oval to sub-spherical with a three layered wall.
13. At maturity oogonium has a single, large and uninucleate egg.
External features of Riccia 35
gametophyte.
The plant body is thalloid, dorsi ventral , prostrate and ribbon-
like. A rosette is fonned due to repeated dichotomies of the
thalli. 3. The thallus is linear to wedge shaped with an apical
notch at the apex and thickened midrib in the sagittal axis. On
the dorsal side, the midrib is traversed by a mid-dorsal groove.
On the ventral side, scales and rhizoids are present. The scales
are present at the margins. The rhizoids arise from the midrib
region. Each scale is violet coloured, multicellular and one
celled thick. 4. 5. 6. Rhizoids are of two types--(i) smooth walled
and (ii) tuberculate. The smooth walled rhizoids have inner
smooth walls whereas tuberculate rhizoids produce tuber-like or
peg-like ingrowths of their inner wall which project into the
lumen of the rhizoids. Sex organs are present in the mid-dorsal
groove and are embedded in the thallus. The sporophytes,
however, may be seen as black dots, when mature, under the
dissecting microscope.
Riccia Gametophyte 36
Riccia T.S of Thallus 37
Riccia T.S of Thallus 38
1. The thallus is boat-shaped in a vertical transverse section.
2. It is thick in the midrib region and gradually thins out towards the margins.
3. The thallus is dorsiventrally differentiated into an upper green
photosynthetic region and a lower colourless storage region.
4. The lower epidermis bounds the storage region on the lower side and
bears the usual two types of rhizoids (smooth walled and tuberculate) in the
centre.
5. The storage region consists of compactly arranged parenchyma. These cells
contain starch.
6. The photosynthetic region consists of vertical rows of unbranched assimilatory
filaments, separated by narrow air chambers. The cells of the filaments are
barrel-shaped and each possesses numerous chloroplasts.
7. The air chambers open to the outside through simple air pores which are the
intercellular spaces between the upper epidermal cells.
8. The uppermost cells of the assimilatory filaments are somewhat large. They
lack chloroplasts and are thus colourless. These form an ill-defined upper
epidermis. 9. On the two margins of the boat shaped section, violet coloured
scales are present.
RICCIA ANTHERIDIUM 39
Riccia- Antheridium 40
Division Bryophyta
Class Anthocerotopsida
Order Anthocerotales
Family Anthocerotaceae
Genus Anthoceros
Anthoceros- Thallus 44
Anthoceros- Thallus 45
Antheridial
Chamber
Antheridial
Wall
stalk
Anthoceros- Archegonium 50
Division Bryophyta
Class Bryopsida
Sub-class Bryidae
Order Polytrichales
Family Polytrichaceae
Genus Polytrichum
Polytrichum- Gametophyte 55
CLASSIFICATION
Division- eumycota
Sub diviision- mastigomycotina
Class- oomycetes
Order- peronosporales
Family- pythiaceae
Genus- pythium
67
PYTHIUM –VEGETATIVE 68
MYCELIUM
PYTHIUM –VEGETATIVE MYCELIUM 69
Pythium species are eukaryotes, that have filamentous, coenocytic
(non-septate threads lacking cross walls) cell growth.
The cell wall of many oomycetes is composed of cellulose and β-1,
3 glucan with minimal amounts of chitin.
Chitin is a major component of the walls of true fungi.
The mycelium appears as white, fluffy mass. It is well developed,
branched, inter- or intracellular , multinucleate
Haustoria are not produced. Food material is absorbed hyphal walls.
Septa appear only in association with the sex organs formation. Cell
wall lacks chitin and instead it is composed of glucan and cellulose.
Cell wall encloses vacuolated cytoplasm, mitochondria, a nuclei,
endoplasmic reticulum, ribosomes, oil globules and glycogen in the
form of reserve food mater.
PYTHIUM-DIFFERTENT TYPES 70
OF SPORANGIA
PYTHIUM-DIFFERTENT TYPES 71
OF SPORANGIA
The asexual or vegetative stage of Pythium produces
I)chlamydospores (thick walled resting spores),
II)sporangia (that germinate directly to produce a hypha or
indirectly to give rise to vesicle outside the sporangium, within
which zoospores are formed), The sporangia are globose to oval
and are either terminal or intercalary in position on the vegetative
hyphae. The terminal or the portion in intercalary region of
hyphae swell up and form globose to oval structure, the
sporangium
III)Hyphal swellings (spherical sporangia-like structures that do
not give rise to zoospores).
MUCOR 72
Kingdom: Mycota
Division: Zygomycota
Sub-division: Zygomycotina
Class: Zygomycetes
Order: Mucorales
Family: Mucoraceae
Genus: Mucor
MUCOR
73
STRUCTURE OF MUCOR 74
The genus Mucor has widespread occurrence and are of considerable
economic importance.
The aerial mycelium consists of branched hyphae, which grow over the
surface. Rhizoids are absent in Mucor.
Colonies are very fast growing, cottony to fluffy, white to yellow, becoming
dark-grey, with the development of sporangia.
Sporangiophores are erect, simple or branched, forming large (60-300 μm
in diameter), terminal, globose to spherical, multispored sporangia, without
apophyses and with well-developed subtending columellae.
A conspicuous collarette (remnants of the sporangial wall) is usually visible
at the base of the columella after sporangiospore dispersal.
Sporangiospores are hyaline, grey or brownish, globose to ellipsoidal, and
smooth-walled or finely ornamented.
Chlamydospores and zygospores may be present.
ASPERGILLUS 75
Kingdom: Fungi
Phylum: Ascomycota
Order: Eurotiales
Family: Trichocomaceae
Genus: Aspergillus
Aspergillus Head Morphology:
(a) Uniseriate, (b) biseriate
76
Morphological Features of
77
Macroscopically Aspergillus colonies are powdery and are of different colours like
Aspergillus
green, blue, black, yellow, brown, etc.
Microscopically mycelium consists of branched, bright or pale coloured hyphae some of
which grow within the substrate while others grow on the
substrate.
From these vegetative hyphae, long, unbranched, nonseptate erect hyphae arise called
conidiophores. The cell from which conidiophore arise is called
foot cell. It is thick walled and T-shaped and one conidiophore arises from each foot
cell.
Conidiophores terminate into a globular structure called vesicle.
Around the vesicle, there are 1-2 layers of flask shaped structures called phialides or
sterigmata.
At the tip of the sterigmata, a chain of small unicellular spores called conidia arises.
Aspergillus Head Morphology: (a) Uniseriate, (b) biseriate
These conidia are formed in basipetal manner (oldest is at the top). These are arranged
compactly side by side. The whole structure consisting of the
foot cell, the upright hypha, the vesicle, the metullae and the phialides constitutes the
78
PUCCINIA
KINGDOM - MYCOTA
DIVISION - EUMYCOTA
SUB-DIVISION - BASIDIOMYCOTINA
CLASS - TELIOMYCETES
ORDER - UREDINALES
FAMILY - PUCCINIACEAE
GENUS - PUCCINIA
T.s. of the leaf 79
showing Uredosorus
1. The uredosori or uredopustules appear as red,oval or lemon shaped lesions
on the leaves and leaf sheaths.
2. The uredosorus in section reveals the ruptured host epidermis due to the
pressure of underlying uredospores.
3. The (dikaryotic) intercellular and branched mycelium is aggregated beneath
the epidermis host cells
4. The uredospores are produced in massive groups from this mycelium.
5. Each uredospore is binucleate, stalked and rounded or oblong in shape.
6. It has an outer exine which is finely verrucose or echinulate and an has
inner smooth intine.
7. Each uredospore has four equatorial germ pores.
8. The uredospores get disseminated by wind and infect the fresh wheat plants.
T.s. of the leaf 80
showing Uredosorus
T.s. of the leaf showing Teleutosorus
81
1. The teleutosori or teleutopustules appear on leaves, leaf sheaths and stem as black, oval
pustules that fuse to form patches in case of severe infection.
2. A teleutosorus in a section reveals the (dikaryotic) intercellular, branched mycelium, a bunch
of teleutospores and the ruptured host epidermis.
3. The host epidermis is ruptured due to the pressure of underlying teleutospores.
4. The teleutospores are formed by the same mycelium which earlier produced uredospores.
5. Each teleutospore is borne terminally by the mycelium. It is stalked, elongated and bicelled
structure.
6. The apex of the teleutospore may be rounded or pointed as in P. graminis or it may be nearly
flat as in P. recondita and P. striiformis.
7. The teleutospore has a very thick but smooth exine and delicate thin intine. The exine turns
black at maturity.
8. At fIrst each of the two cells of the teleutospore is binucleate but later on, the nuclei fuse
making each of them uninucleate.
9. Each cell of the bicelled teleutospore has a single germ pore.
10. The teleutospores are incapable of infecting the primary host (wheat plant). They germinate
to form the basidiospores which infect the barberry plant or Thalictrum, etc., the alternate host.
T.s. of the leaf showing 82
Teleutosorus
CERCOSPORA
83
KINGDOM-MYCOTA
DIVISION- EUMYCOTA
SUB-DIVISION-DEUTEROMYCOTINA
CLASS-HYPHOMYCETES
ORDER-MONILIALES
FAMILY-DEMATIACEAE
GENUS-CERCOSPORA
CERCOSPORA 84
CERCOSPORA 85
Causal Organism:
Mycoplasma like organism (MLO).
Disease Cycle:
The disease is transmitted through by the vector Cestius phycitis. Artificially the disease has been
transmitted successfully to tomato, potato and tobacco.
Probably during the season of Brinjal crop, the causal agent survives on weed hosts and from there it is
transmitted to main crop by its insect vector.
Control Measures of Little Leaf Disease: 87
Since no effective control measure is found it is better to eradicate the weed
host and remove the diseased Brinjal plants. Tetra-cycline has been reported to
control the disease.
Disease Management :-
Removal & destruction of weeds and infected plants
•Spray insecticides for managing insect vector
•Seedling treatment – benomyal + tetracycline @ 1000 ppm
•Spray- tetracycline @ 1000 ppm 3 times at 7 days interval
•Use- disease resistant varieties- BB-7, BWR-12, Pant Ritu Raj & H-8
LITTLE LEAF OF BRINJAL 88
BACTERIAL DISEASE - CITRUS CANKER
Citrus Canker Infect all citrus spp. Citrus canker, is characterized by erumpent lesions 89
on fruit,
foliage, and young stems of susceptible cultivars of citrus
Symptoms:
• Firstly symptoms on lower side &later on both side of leaves
• Small, round, watery, translucent raised, yellow brown spots on leaves & old branches
Spots – white to greenish & finally rapture –rough corky
• Rough lesions surrounded by–yellow brown to green raised margin & watery yellow halo
Kingdom: Fungi
Division: Ascomycota
Class: Lecanoromycetes
Order: Lecanorales
Family: Parmeliaceae
Genus: Usnea
USNEA- THALLUS 98
Usnea is a genus of mostly pale grayish-green fruticose lichens that grow like leafless mini-
shrubs or tassels anchored on bark or twigs.
Members of the genus are commonly called old man's beard, or beard lichen.
Like other lichens it is a symbiosis of a fungus and an alga. In Usnea, the fungus belongs to the
division Ascomycota, while the alga is a member of the division Chlorophyta. A cross section of the thallus
reveals a central medullary tissue consisting of loosely arranged hyphae with many interspaces between. It is
surrounded by an algal layer with a thin cortex external to it. The phycobiont is a green alga, Protococcus.
Usnea is an cylindrical to ribbon-like, much branched thallus. It grows erect or pendant attached by a holdfast at
the base only to the substratum (branches of trees). The thallus is usually grey-green and consists of a single
main stalk or many.
The stalks arise from the base and fork repeatedly. The main stalks and the branches are covered with
conspicuous, branchlet-like bristles or fibrils.
The thallus reproduces vegetatively by fragmentation. Some species (U. comosa) bear cigar- shaped soredia in
whitish soralia.
The apothecia are large, plate-like and terminal in position. The apothecium has a thalline margin fringed with
bristle-like outgrowths which may be simple or branched.