Cycling Fossil Bacteria
Cycling Fossil Bacteria
Cycling Fossil Bacteria
8-Ga Duck
Creek Formation provide promising evidence of
evolution’s null hypothesis
J. William Schopfa,b,c,d,e,1, Anatoliy B. Kudryavtsevb,d,e, Malcolm R. Walterf,g, Martin J. Van Kranendonkf,h,i,
Kenneth H. Williforde,j,k, Reinhard Kozdone,j, John W. Valleye,j, Victor A. Gallardol, Carola Espinozal,
and David T. Flanneryf,g,k
a
Department of Earth, Planetary, and Space Sciences, bCenter for the Study of Evolution and the Origin of Life, and cMolecular Biology Institute,
University of California, Los Angeles, CA 90095; dPenn State Astrobiology Research Center, University Park, PA 16802; eAstrobiology Research Consortium
and jDepartment of Geoscience, University of Wisconsin−Madison, Madison, WI 53706; fAustralian Centre for Astrobiology, gSchool of Biotechnology and
Biomolecular Sciences, hSchool of Biological, Earth and Environmental Sciences, and iAustralian Research Council Centre of Excellence for Core to Crust Fluid
Systems, University of New South Wales, Randwick, NSW 2052, Australia; kJet Propulsion Laboratory, California Institute of Technology, Pasadena, CA 91109;
and lDepartamento de Oceanografía, Facultad de Ciencias Naturales y Oceanográficas, Universidad de Concepción, Concepción, Chile
Edited by Thomas N. Taylor, University of Kansas, Lawrence, KS, and approved January 5, 2015 (received for review October 6, 2014)
The recent discovery of a deep-water sulfur-cycling microbial biota from the ∼2.4- to ∼2.2-Ga Great Oxidation Event, the “GOE”
in the ∼2.3-Ga Western Australian Turee Creek Group opened a (5). Further, the Duck Creek fossils evidence the “hypo-
new window to life’s early history. We now report a second such bradytely” of early-evolved microbes, an exceptionally low rate of
subseafloor-inhabiting community from the Western Australian discernable evolutionary change and a term coined (6) to parallel
∼1.8-Ga Duck Creek Formation. Permineralized in cherts formed the three other distinct rate distributions in evolution proposed
EVOLUTION
during and soon after the 2.4- to 2.2-Ga “Great Oxidation Event,” in 1944 by G. G. Simpson (7) on the basis of morphological
these two biotas may evidence an opportunistic response to the comparisons of fossil and living taxa. This striking degree of
mid-Precambrian increase of environmental oxygen that resulted conservatism, documented initially for Proterozoic cyanobacteria
in increased production of metabolically useable sulfate and ni- (6, 8), is shown here for colorless sulfur bacteria by the marked
trate. The marked similarity of microbial morphology, habitat, similarities in habitat, web-like fabric, and organismal morphol-
and organization of these fossil communities to their modern ogy and composition of the Duck Creek biota to the ∼2.3-Ga
EARTH, ATMOSPHERIC,
change that, if paralleled by their molecular biology, would evi- biotas known from subseafloor sediments off the west coast of
dence extreme evolutionary stasis. South America (9, 10).
The two mid-Precambrian communities, closely similar in all
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Great Oxidation Event microbial evolution null hypothesis | salient characteristics, differ markedly from fossil and modern
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Precambrian microorganisms sulfur bacteria photoautotroph-dominated stromatolitic/microbial mat-forming
microbiotas (refs. 11 and 12, Fig. 1). The fossil filaments are also
unlike modern iron-metabolizing microbes, whether Fe+2 oxi-
W e here describe a Paleoproterozoic marine deep-water
sediment-inhabiting sulfur-cycling microbial community
permineralized in cherts of the ∼1.8-Ga Duck Creek Formation
dizing or Fe+3 reducing. That they are neither aerobic iron oxi-
dizers nor anaerobic photosynthetic iron oxidizers is evidenced
of Western Australia, the second such subseafloor biocoenose by their anoxic subseafloor habitat, discussed in Geological
reported from the geological record. Comparable modern com-
munities, well studied in marine mud, are characterized by the Significance
presence of large populations of bacteria that metabolically cycle
sulfur and by a low content of dissolved oxygen that, in the An ancient deep-sea mud-inhabiting 1,800-million-year-old
subsurface parts of the community, is essentially zero. Physically, sulfur-cycling microbial community from Western Australia is
they typically are composed of two regions: a quiescent sub- essentially identical both to a fossil community 500 million
surface anoxic zone consisting of an interlaced web-like fabric of years older and to modern microbial biotas discovered off the
randomly oriented and commonly exceedingly long filamentous coast of South America in 2007. The fossils are interpreted to
anaerobic microbes ≤10 μm in diameter and an overlying, sur- document the impact of the mid-Precambrian increase of at-
face-to-subsurface zone characterized by the presence of such mospheric oxygen, a world-changing event that altered the
large-diameter microaerophilic taxa as Thioploca and Beggiatoa. history of life. Although the apparent 2-billion-year-long stasis
Metabolically, sulfur-cycling in such ecosystems is fueled by of such sulfur-cycling ecosystems is consistent with the null
seawater sulfate that, in the anoxic zone, is bacterially reduced to hypothesis required of Darwinian evolution—if there is no change
hydrogen sulfide; such sulfide can then be oxidized to elemental in the physical-biological environment of a well-adapted ecosys-
sulfur, either by nitrate-using anaerobes or by microaerophiles, tem, its biotic components should similarly remain unchanged—
using dissolved oxygen derived from overlying waters, and the additional evidence will be needed to establish this aspect of
sulfur, in turn, can be microbially oxidized to sulfate. evolutionary theory.
The Duck Creek biota is ∼500 Ma younger than the first such
Author contributions: J.W.S., K.H.W., and J.W.V. designed research; J.W.S., A.B.K., M.R.W.,
fossil community discovered, a sulfur-cycling microbial bio- M.J.V.K., K.H.W., R.K., V.A.G., C.E., and D.T.F. performed research; J.W.S., A.B.K., M.R.W.,
coenose recently described from the Turee Creek Group Kazput M.J.V.K., K.H.W., R.K., J.W.V., V.A.G., C.E., and D.T.F. analyzed data; and J.W.S., M.R.W., K.H.W.,
Formation, also of northwestern Australia (1). Previously con- J.W.V., and V.A.G. wrote the paper.
sidered to be a cyanobacterium-dominated photic-zone assem- The authors declare no conflict of interest.
blage (2, 3) or a deeper water community using iron-based This article is a PNAS Direct Submission.
metabolism (4), our reinterpretation of the Duck Creek biota is 1
To whom correspondence should be addressed. Email: schopf@ess.ucla.edu.
consistent with a proliferation of sulfur-cycling biocoenoses fol- This article contains supporting information online at www.pnas.org/lookup/suppl/doi:10.
lowing the upsurge of biologically available sulfate and nitrate 1073/pnas.1419241112/-/DCSupplemental.
EVOLUTION
∼40‰ (Fig. 4). The most plausible explanation for the broad
range and virtually uniformly positive δ34S values of the Duck
Creek pyrite (Dataset S1) is the precipitation of pyrite by sul-
fate-reducing bacteria in an environment exhibiting very low
seawater sulfate concentrations, like that indicated for other
Proterozoic units of comparable age (23), in a relatively closed
Fig. 4. Sulfur isotopic SIMS δ34S(VCDT) analyses of Duck Creek pyrite. Back- Discussion
scattered electron images of pyritic filaments (A−C) and framboidal pyrite In the aftermath of the ∼2.4- to ∼2.2-Ga GOE, it is likely that
(D) (M.R.W. collection 12.06.18.2, compare PPRG samples 049–053). The surface waters of the Duck Creek basin were at least weakly oxic
Insets in A−C, acquired by combined transmitted and reflected light, show (37–40). The increase of atmospheric oxygen at the GOE would
filaments plunging beneath the thin section surface; arrows point to SIMS have increased the abundance not only of seawater sulfate (5, 25)—
analytical pits.
precursor of the bacterially generated H2S that, despite competition
for reaction with dissolved ferrous iron, would have produced local
approximates the δ34S of mid-Precambrian oceanic sulfate (see sulfidic regions (38, 39) that may have promoted the spread of
SI Text, Fig. S2, and Dataset S1). sulfur-cycling communities—but also of nitrate, “oxygenation of the
upper parts of the oceans almost certainly [being] accompanied by
Paleoecology. Although data summarized above indicate that a shift in the marine chemistry of nitrogen from NH4+-dominated to
both the ∼1.8-Ga Duck Creek and ∼2.3-Ga Turee Creek fos- NO3−-dominated” (ref. 5, pages 3820–3821) with “a complete ni-
siliferous cherts are benthic and subseafloor, evidently formed trogen biogeochemical cycle [being] established by about 2.0 Ga”
beneath storm wave base and likely subphotic zone, there is no (41, page 349). Such nitrate, diffusing from overlying waters into
reliable geologic index to establish quantitatively their bathy- subseafloor sediments, would have served to fuel anaerobic oxida-
metric setting. Nevertheless, their formation in such an envi- tive phosphorylation in the anoxic zone of sulfur-cycling commu-
ronment is consistent with and supported by both positive and nities. The GOE-spurred increase of H2S may also have affected
negative evidence. photic-zone communities where it would have been consumed by
Positive evidence indicating the fossil assemblages to be sub- associated sulfur cyclers, by anoxygenic photosynthetic bacteria, and
seafloor include the following: Regional geology, sequence by cyanobacteria capable of facultative (anoxygenic or oxygenic)
stratigraphy, local geology, disposition of the fossil-bearing beds, photosynthesis (42).
paleoecologic setting, fabric of the fossiliferous cherts, mor- Thus, we interpret the microbial biotas of the Turee Creek and
phology of the fossils, sulfur isotope data showing the prevalence Duck Creek cherts to reflect an opportunistic response to the
of strictly anaerobic sulfate reducers in a restricted environment, GOE, an interpretation consistent with the metabolic and bio-
and the community composition and one-to-one comparison of synthetic pathways of modern microbes as well as fossil evidence
the morphology of the fossil microbes to principal components of suggesting the immediately post-GOE appearance of oxygen-
extant anaerobic subseafloor sulfur-cycling communities. protective mechanisms in nostocalean cyanobacteria and the
Negative evidence indicating the fossil assemblages not to be advent of obligately aerobic eukaryotes (43).
shallow-water phototrophic include the following: Regional and How could the seemingly identical sulfur-cycling anoxic sedi-
local geology (namely, sequence stratigraphy, lack of shallow- ment-inhabiting biotas of the ∼1.8-Ga Duck Creek and ∼2.3-Ga
water indicators, and the fine-grained petrology of associated Turee Creek cherts, like those of Proterozoic stromatolitic cya-
carbonates and their lack of clastics), morphometrics of the nobacteria (6, 8), have evidently remained fundamentally un-
fossils documenting their dissimilarity from coeval shallow-water changed over billions of years?
photic-zone phototrophs, and sulfur isotope data establishing the We suggest differing answers for these two early-evolved
prevalence of anaerobic sulfate reducers. hypobradytelic lifestyles:
Other lines of evidence further support interpretation of the i) For cyanobacteria, the answer evidently lies in a genetically
Duck Creek biota as a sulfur-cycling mud-inhabiting community encoded ecological flexibility derived from their early adap-
of anaerobic microbes: (i) Global models suggest that subsurface tation to geologically exceedingly slow changes of the photic-
water masses of the latest Paleoproterozoic were essentially zone environment (e.g., of solar luminosity, UV flux, day
anoxic and in some regions sulfidic, evidenced in the rock record length, and CO2, O2, and usable sulfur and nitrogen). Be-
by pyritic shales (23–25). (ii) The fossiliferous Duck Creek chert cause of their large population sizes, global dispersal by
locally contains copious authigenic pyrite, some encrusting mi- ocean currents and hurricanes, and capability to generate
crobial filaments, and a firm indicator of local anoxic conditions oxygen toxic to anaerobic competitors for photosynthetic
(Fig. S3). (iii) The Duck Creek biota, like others of similar age space, these ecologic generalists adapted to and survived in
(1, 26–29), contains the asteriform microbe Eoastrion (Figs. S4 a wide range of habitats (6).
and S5) that closely resembles modern Metallogenium, a plank- ii) Once subseafloor sulfur-cycling microbial communities had
tonic microaerophile that inhabits the hypolimnion, where it become established, however, there appears to have been little
EVOLUTION
subseafloor microbes of modern communities off the west coast confirmed the null hypothesis required of Darwinian evolution,
of South America (9, 10), none of which has received detailed but such an assessment would be, at present, premature.
morphometric, taxonomic, and systemic evaluation.
Moreover, and although, like Simpson’s classic rate dis- Methods
tributions of evolution (7), the morphology-based “concept of Optical Microscopy and Raman Spectroscopy. Optical studies of all specimens,
hypobradytely does not necessarily imply genomic, biochemical, embedded in petrographic thin sections, were performed using standard
1. Grice K, et al. (2012) A 2.3 Ga sulfuretum at the GOE: Microfossils and organic geo- 6. Schopf JW (1994) Disparate rates, differing fates: Tempo and mode of evolution changed
chemistry evidence from the Turee Creek Group, Western Australia. Astrobiology from the Precambrian to the Phanerozoic. Proc Natl Acad Sci USA 91(15):6735–6742.
Science Conference 2012 (NASA Astrobiol Program, Atlanta, GA), Abstract 2084. 7. Simpson GG (1944) Tempo and Mode in Evolution (Columbia Univ Press,
Available at abscicon2012.arc.nasa.gov/abstracts. New York).
2. Knoll AH, Barghoorn ES (1976) A gunflint-type microbiota from the Duck Creek do- 8. Schopf JW (1968) Microflora of the Bitter Springs Formation, Late Precambrian,
lomite, western Australia. Orig Life 7(4):417–423. Central Australia. J Paleontol 42:651–688.
3. Knoll AH, Strother PK, Rossi S (1988) Distribution and diagenesis of microfossils from 9. Gallardo VA, Espinoza C (2007) New communities of large filamentous sulfur bacteria
the lower Proterozoic Duck Creek Dolomite, Western Australia. Precambrian Res 38: in the eastern South Pacific. Int Microbiol 10(2):97–102.
257–279. 10. Gallardo VA, Espinoza C (2007) Large multicellular filamentous bacteria under the
4. Wilson JP, et al. (2010) Geobiology of the late Paleoproterozic Duck Creek Formation, oxygen minimum zone of the eastern South Pacific: A forgotten biosphere. Proc SPIE
Western Australia. Precambrian Res 179:135–149. 6694:H1–H11.
5. Holland HD (2002) Volcanic gases, black smokers, and the Great Oxidation Event. 11. Schopf JW (1992) The Proterozoic Biosphere, A Multidisciplinary Study, eds Schopf JW,
Geochim Cosmochim Acta 66:3811–3826. Klein C (Cambridge Univ Press, New York), pp 195–218.