Module 1 Notes
Module 1 Notes
Module 1 Notes
1.1 Carbohydrates:
Carbohydrates are a class of organic compounds that play a crucial role in biology and
are an important source of energy for living organisms. They are composed of carbon (C),
hydrogen (H), and oxygen (O) atoms and are classified based on their molecular structure and
function. General formula is Cn(H2O)n.
Monosaccharides
These are the simplest form of carbohydrates and include glucose and fructose. They are
easily soluble in water and serve as the primary source of energy for the body.
Disaccharides
These are formed by the condensation of two monosaccharides and include sucrose,
lactose, and maltose. They are commonly found in sugar and are broken down into
monosaccharides during digestion.
Figure: Structural formula of sucrose, lactose, and maltose
Polysaccharides
These are long chains of monosaccharides linked together. They serve as storage
molecules for energy, such as glycogen in animals and starch in plants, and also provide
structure and support, such as cellulose in plant cell walls. In addition to their role as energy
sources, carbohydrates also play important roles in cellular processes, such as cellular signaling
and recognition, and in regulating gene expression.
Properties of PHA
PHAs have several properties that make them ideal for use as bioplastics, including:
Biodegradability: PHAs are biodegradable and can break down into water and carbon
dioxide, reducing their impact on the environment.
Biocompatibility: PHAs are biocompatible and can be used in medical devices, such as
sutures and implants, without causing adverse reactions in the body.
Mechanical properties: PHAs have similar mechanical properties to traditional petroleum-
based plastics, making them suitable for various applications.
Processing: PHAs can be processed using conventional plastic processing techniques, such
as injection molding, blow molding, and extrusion.
1.2 Nucleic Acids: Nucleic acids are biopolymers that play a crucial role in the
storage and transfer of genetic information in all living organisms. There are two types of nucleic
acids:
Deoxyribonucleic acid (DNA): DNA is the genetic material that carries the instructions for
the development, functioning, and reproduction of all living organisms. DNA is a double-
stranded helix structure composed of nucleotides, which consist of a sugar (deoxyribose), a
phosphate group, and a nitrogenous base (adenine, guanine, cytosine, or thymine).
Ribonucleic acid (RNA): RNA is involved in the expression of the genetic information
stored in DNA by carrying the message from the DNA to the ribosome, where it is used to
build proteins. RNA is a single-stranded molecule composed of nucleotides, which consist
of a sugar (ribose), a phosphate group, and a nitrogenous base (adenine, guanine, cytosine,
or uracil).
Figure: Schematic representation of DNA and RNA
Both DNA and RNA play essential roles in the functioning of cells and organisms, and
their structures and interactions with other molecules are the basis for many biological processes
such as replication, transcription, and translation.
1.3 Proteins:
Proteins are large, complex molecules made up of chains of smaller building blocks
called amino acids. They play a vital role in the structure, function, and regulation of cells,
tissues, and organs.
Functions of Proteins
Proteins perform a wide range of functions in the body, including
1) Catalyzing chemical reactions
Amylase: An enzyme that breaks down starch into simple sugars like glucose and maltose. It
is found in saliva and pancreatic juice.
Lipase: An enzyme that breaks down fats into fatty acids and glycerol. It is found in the
pancreas and small intestine.
Catalase: An enzyme that converts hydrogen peroxide into water and oxygen. It is found in
most cells of the body.
Trypsin: An enzyme that breaks down proteins into smaller peptides. It is produced in the
pancreas and released into the small intestine.
ATP synthase: An enzyme that catalyzes the synthesis of ATP (adenosine triphosphate)
from ADP (adenosine diphosphate) and phosphate. It is found in the mitochondria of cells.
2) Transporting molecules
Hemoglobin: Hemoglobin is a protein found in red blood cells that transports oxygen from
the lungs to the tissues in the body.
Albumin: Albumin is a protein found in blood plasma that helps transport various substances
such as hormones, fatty acids, and drugs throughout the body.
Transferrin: Transferrin is a protein that transports iron in the blood from the site of
absorption in the gut to the bone marrow, liver, and other tissues that require it.
Apolipoproteins: Apolipoproteins are a family of proteins that transport lipids (fats) in the
bloodstream. Examples include ApoA, ApoB, and ApoE.
Ferritin: Ferritin is a protein that stores iron in a non-toxic form in the liver, spleen, and bone
marrow.
Glut transporters: Glut transporters are a family of proteins that transport glucose and other
sugars across cell membranes. Examples include GLUT1 and GLUT4.
3) Providing mechanical support
Collagen: Collagen is the main structural protein in the body and provides support to tissues
such as skin, tendons, cartilage, bone, and teeth.
Elastin: Elastin is a protein that provides elasticity and stretchability to tissues such as skin,
lungs, arteries, and ligaments.
Keratin: Keratin is a protein that forms the structural basis of hair, nails, and the outer layer
of skin.
Actin and Myosin: Actin and myosin are proteins that are involved in muscle contraction
and provide the mechanical force required for movement.
Tubulin: Tubulin is a protein that forms the structural basis of microtubules, which provide
support to cells and are involved in various cellular processes such as cell division and
intracellular transport.
Laminin: Laminin is a protein that forms part of the extracellular matrix and provides
structural support to cells in tissues such as skin, muscles, and organs.
and
4) Regulating cell behavior
Receptor proteins: Receptor proteins are proteins that are located on the surface of cells and
bind to specific signaling molecules such as hormones, growth factors, and
neurotransmitters. When these molecules bind to the receptor, they trigger a cellular
response, such as a change in gene expression or the activation of an intracellular signaling
pathway.
Enzymes: Enzymes are proteins that catalyze specific chemical reactions in the body. Many
enzymes are involved in regulating cellular behavior, such as kinases and phosphatases that
regulate protein phosphorylation and dephosphorylation, respectively.
Cytoskeleton proteins: Cytoskeleton proteins, such as actin and tubulin, play a critical role in
regulating cell shape, movement, and division.
Transcription factors: Transcription factors are proteins that bind to DNA and regulate gene
expression. They play a critical role in regulating cellular differentiation, proliferation, and
apoptosis.
Adhesion proteins: Adhesion proteins are proteins that are involved in cell-to-cell and cell- to-
matrix adhesion. They play a critical role in regulating cell behavior such as cell migration,
tissue development, and wound healing.
Ion channels: Ion channels are proteins that allow ions to move across the cell membrane.
They play a critical role in regulating cellular excitability and communication.
Proteins are also involved in immune responses, hormone regulation, and muscle
contraction.
The structure of a protein determines its function, and the sequence of amino acids in a
protein determines its structure.
There are 20 different types of amino acids, and the specific sequence of amino acids in a
protein determines its unique structure and function.
Proteins are synthesized by cells from the genetic information encoded in DNA. The
process of protein synthesis begins when the genetic code for a particular protein is transcribed
into a molecule of messenger RNA (mRNA). The mRNA is then transported out of the nucleus
and into the cytoplasm, where it is translated into a protein by ribosomes. Proteins play a critical
role in many biological processes, and their dysfunction is involved in the development of many
diseases, including cancer, heart disease, and neurological disorders. Understanding the structure
and function of proteins is therefore a major focus of biomedical research, with the goal of
developing new treatments and therapies for these diseases.
a) b) c)
d) e) f)
Figure: Images of a) Tofu, b) Tempeh, c) Seitan, d) Veggie burgers, e) Meatless meatballs, f)
Plant-based sausages
These are just a few examples of meat analogs of protein as food. There are many other
products available that can provide a similar taste, texture, and nutritional profile
meat, making it easier for people to reduce or eliminate their meat consumption for health or
ethical reasons.
1.4 Lipids:
Lipids are a group of organic compounds that include fats, oils, waxes, and some
hormones.
Figure: Schematic representation of lipid molecule, bilayer formation, and miscelle formation.
Figure: Molecular structure of phospholipid (cell membrane) and triglyceride (fat)
Role of Lipids
Energy storage: Lipids are a major source of stored energy in the body, and they can be
broken down to release energy when it is needed.
Insulation: Lipids help to insulate the body, helping to regulate temperature and protect
against heat loss.
Cell membrane structure: Lipids are a major component of cell membranes, helping to
maintain their fluidity and stability.
Hormone synthesis: Some lipids, such as cholesterol, are precursors to hormones, and are
necessary for their production.
Transport: Lipids are soluble in fat, but not in water. This makes them ideal for carrying fat-
soluble vitamins and other lipophilic compounds through the bloodstream.
There are several types of lipids, including saturated and unsaturated fats, phospholipids,
and steroids. It is important to have a balanced diet that includes a moderate amount of healthy
lipids, such as monounsaturated and polyunsaturated fats, while limiting the intake of saturated
and trans fats. This can help to maintain overall health and reduce the risk of chronic diseases
such as heart disease and stroke.
Advantages
Renewability: Lipids are a renewable resource, and they can be produced from a variety of
sources, such as vegetable oils, animal fats, and microalgae.
Reduced emissions: Biodiesel produces fewer emissions compared to traditional diesel fuel,
reducing the impact on the environment and public health.
Improved performance: Biodiesel can improve engine performance, increasing fuel
efficiency and reducing engine wear and tear.
Biodegradability: Biodiesel is biodegradable, which reduces the risk of environmental
contamination in the event of a spill.
However, there are also some limitations to the use of lipids as biodiesel, such as higher
production costs compared to traditional diesel fuel and the need for more efficient and cost-
effective processing methods. Nevertheless, the use of lipids as biodiesel has the potential to play
an important role in the transition towards a more sustainable energy system.
Biosensors
Glucose-Oxidase in Biosensors
Glucose oxidase (GOx) is an enzyme commonly used in biosensors for the detection of
glucose levels in biological fluids, such as blood and urine. The enzyme catalyzes the oxidation
of glucose to gluconolactone and hydrogen peroxide (H 2O2), which can be easily detected and
quantified by a transducer.
Figure: Schematic representation of GOx
In glucose biosensors, GOx is typically immobilized on a substrate, such as a polymeric
film, to ensure stability and specificity. The transducer in the biosensor can be an electrode, a
fluorescence-based system, or other type of sensor, depending on the desired level of sensitivity
and specificity.
Advantages of Biosensors
Sensitivity: Biosensors are highly sensitive and can detect target analytes at low
concentrations, making them useful in applications that require precise quantification.
Specificity: Biosensors can be designed to specifically recognize a target analyte, which
minimizes interference from other substances in the sample.
Rapid response time: Biosensors can provide results in real-time, making them useful in
situations where quick results are required.
Portability: Biosensors can be designed to be small and portable, making them useful in field
applications and remote locations.
Cost-effectiveness: Biosensors can be manufactured at a low cost, making them an attractive
alternative to more expensive analytical methods in some applications.
Limitations of Biosensors
Stability: Biosensors can be affected by environmental conditions, such as temperature and
pH, which can lead to degradation of the biological recognition element and loss of
sensitivity.
Interferences: Biosensors can be affected by other substances in the sample, which can
interfere with the performance of the biosensor.
Calibration: Biosensors may require frequent calibration to ensure accuracy, which can
increase the time and cost associated with using the biosensor.
Limited shelf-life: Biosensors have a limited shelf-life, and the biological recognition
element may degrade over time, leading to decreased sensitivity and specificity.
Complexity: Biosensors can be complex to manufacture and use, requiring specialized
equipment and expertise to operate effectively.
Despite these limitations, biosensors have proven to be a valuable tool in various
industries and applications, and research is ongoing to improve their performance and reduce
limitations.
Bio-Bleaching
Bio-bleaching is a process that uses biological agents, such as enzymes, to remove color
and brighten fibers, paper, and textiles. It is a sustainable alternative to traditional chemical
bleaching methods that use harsh chemicals, such as hydrogen peroxide and chlorine.
Advantages of Bio-Bleaching
Sustainability: Bio-bleaching uses biological agents, such as enzymes, which are renewable
and biodegradable, reducing the environmental impact compared to traditional chemical
bleaching methods.
Improved product quality: Bio-bleaching can result in higher brightness and a more uniform
color compared to traditional chemical bleaching, leading to improved product quality.
Reduced energy consumption: Bio-bleaching typically requires lower energy input
compared to chemical bleaching methods, reducing energy consumption and associated
costs.
Elimination of hazardous chemicals: Bio-bleaching eliminates the use of harsh chemicals,
such as hydrogen peroxide and chlorine, which can be hazardous to workers and the
environment.
Lower production of harmful by-products: Bio-bleaching reduces the formation of harmful
by-products, such as dioxins, that can be produced during traditional chemical bleaching
methods.
Limitations of Bio-bleaching
High cost of enzyme production: The cost of producing enzymes used in bio-bleaching can
be high, making the process more expensive compared to traditional chemical bleaching
methods.
Low efficiency compared to chemical bleaching: Bio-bleaching can be less efficient
compared to traditional chemical bleaching methods, requiring longer processing times and
higher enzyme doses.
Need for further research: Bio-bleaching is still in the early stages of development, and
further research is needed to optimize the process and improve efficiency.
Lack of widespread implementation: The widespread implementation of bio-bleaching is
limited by factors such as the high cost of enzyme production, low efficiency compared to
chemical bleaching, and the need for further research to optimize the process.
Lignolytic Enzyme in Bio-Bleaching
Lignolytic enzymes, such as laccases, peroxidases, and manganese peroxidases, are used
in bio-bleaching to remove color and brighten fibers, paper, and textiles. These enzymes catalyze
the oxidation of colored impurities in the fibers, resulting in a brighter and more uniform color.
Laccases are copper-containing oxidases that catalyze the oxidation of lignin, a complex
polymer found in plant cell walls, as well as other compounds such as phenols and aryl
alcohols.
Peroxidases are enzymes that use hydrogen peroxide to oxidize organic compounds.
Manganese peroxidases are enzymes that use hydrogen peroxide to oxidize lignin and other
compounds.
The lignolytic enzymes used in bio-bleaching are typically produced by fungi
or bacteria, and are immobilized on a support, such as a ceramic bead or a cellulosic
matrix, to ensure stability and prolonged activity.
The immobilized enzymes are then added to the fibers, where they catalyze the oxidation
of colored impurities, resulting in a brighter and more uniform color.