Taxonomy
Taxonomy
A taxonomy organizes taxonomic units known as "taxa" (singular "taxon")." Many are hierarchies.
One function of a taxonomy is to help users more easily find what they are searching for. This may be
effected in ways that include a library classification system and a search engine taxonomy.
Etymology
The word was coined in 1813 by the Swiss botanist A. P. de Candolle and is irregularly compounded from
the Greek τάξις, taxis 'order' and νόμος, nomos 'law', connected by the French form -o-; the regular form
would be taxinomy, as used in the Greek reborrowing ταξινομία.[1][2]
Applications
Wikipedia categories form a taxonomy,[3] which can be extracted by automatic means.[4] As of 2009, it
has been shown that a manually-constructed taxonomy, such as that of computational lexicons like
WordNet, can be used to improve and restructure the Wikipedia category taxonomy.[5]
In a broader sense, taxonomy also applies to relationship schemes other than parent-child hierarchies,
such as network structures. Taxonomies may then include a single child with multi-parents, for example,
"Car" might appear with both parents "Vehicle" and "Steel Mechanisms"; to some however, this merely
means that 'car' is a part of several different taxonomies.[6] A taxonomy might also simply be organization
of kinds of things into groups, or an alphabetical list; here, however, the term vocabulary is more
appropriate. In current usage within knowledge management, taxonomies are considered narrower than
ontologies since ontologies apply a larger variety of relation types.[7]
Mathematically, a hierarchical taxonomy is a tree structure of classifications for a given set of objects. It
is also named containment hierarchy. At the top of this structure is a single classification, the root node,
that applies to all objects. Nodes below this root are more specific classifications that apply to subsets of
the total set of classified objects. The progress of reasoning proceeds from the general to the more
specific.
History
Anthropologists have observed that taxonomies are generally embedded in local cultural and social
systems, and serve various social functions. Perhaps the most well-known and influential study of folk
taxonomies is Émile Durkheim's The Elementary Forms of Religious Life. A more recent treatment of
folk taxonomies (including the results of several decades of empirical research) and the discussion of
their relation to the scientific taxonomy can be found in Scott Atran's Cognitive Foundations of Natural
History. Folk taxonomies of organisms have been found in large part to agree with scientific
classification, at least for the larger and more obvious species, which means that it is not the case that folk
taxonomies are based purely on utilitarian characteristics.[9]
In the seventeenth century, the German mathematician and philosopher Gottfried Leibniz, following the
work of the thirteenth-century Majorcan philosopher Ramon Llull on his Ars generalis ultima, a system
for procedurally generating concepts by combining a fixed set of ideas, sought to develop an alphabet of
human thought. Leibniz intended his characteristica universalis to be an "algebra" capable of expressing
all conceptual thought. The concept of creating such a "universal language" was frequently examined in
the 17th century, also notably by the English philosopher John Wilkins in his work An Essay towards a
Real Character and a Philosophical Language (1668), from which the classification scheme in Roget's
Thesaurus ultimately derives.
Natural sciences
Taxonomy in biology encompasses the description, identification, nomenclature, and classification of
organisms. Uses of taxonomy include:
Alpha taxonomy, the description and basic classification of new species, subspecies, and
other taxa
Linnaean taxonomy, the original classification scheme of Carl Linnaeus
rank-based scientific classification as opposed to clade-based classification
Evolutionary taxonomy, traditional post-Darwinian hierarchical biological classification
Numerical taxonomy, various taxonomic methods employing numeric algorithms
Phenetics, system for ordering species based on overall similarity
Phylogenetics, biological taxonomy based on putative ancestral descent of organisms
Plant taxonomy
Virus classification, taxonomic system for viruses
Folk taxonomy, description and organization, by individuals or groups, of their own
environments
Nosology, classification of diseases
Soil classification, systematic categorization of soils
Computing
Software engineering
Vegas et al.[10] make a compelling case to advance the knowledge in the field of software engineering
through the use of taxonomies. Similarly, Ore et al.[11] provide a systematic methodology to approach
taxonomy building in software engineering related topics.
Several taxonomies have been proposed in software testing research to classify techniques, tools,
concepts and artifacts. The following are some example taxonomies:
1. A taxonomy of model-based testing techniques[12]
2. A taxonomy of static-code analysis tools[13]
Engström et al.[14] suggest and evaluate the use of a taxonomy to bridge the communication between
researchers and practitioners engaged in the area of software testing. They have also developed a web-
based tool[15] to facilitate and encourage the use of the taxonomy. The tool and its source code are
available for public use.[16]
Safety
Uses of taxonomy in safety include:
Safety taxonomy, a standardized set of terminologies used within the fields of safety and
health care
Human Factors Analysis and Classification System, a system to identify the human
causes of an accident
Swiss cheese model, a model used in risk analysis and risk management propounded
by Dante Orlandella and James T. Reason
A taxonomy of rail incidents in Confidential Incident Reporting & Analysis System
(CIRAS)
Other taxonomies
Military taxonomy, a set of terms that describe various types of military operations and
equipment
Moys Classification Scheme, a subject classification for law devised by Elizabeth Moys
Research publishing
Citing inadequacies with current practices in listing authors of papers in medical research journals,
Drummond Rennie and co-authors called in a 1997 article in JAMA, the Journal of the American Medical
Association for
a radical conceptual and systematic change, to reflect the realities of multiple authorship
and to buttress accountability. We propose dropping the outmoded notion of author in favor
of the more useful and realistic one of contributor.[17]: 152
In 2012, several major academic and scientific publishing bodies mounted Project CRediT to develop a
controlled vocabulary of contributor roles.[18] Known as CRediT (Contributor Roles Taxonomy), this is an
example of a flat, non-hierarchical taxonomy; however, it does include an optional, broad classification of
the degree of contribution: lead, equal or supporting. Amy Brand and co-authors summarise their
intended outcome as:
Identifying specific contributions to published research will lead to appropriate credit, fewer
author disputes, and fewer disincentives to collaboration and the sharing of data and
code.[17]: 151
CRediT comprises 14 specific contributor roles using the following defined terms:
Conceptualization
Methodology
Software
Validation
Formal Analysis
Investigation
Resources
Data curation
Writing – Original Draft
Writing – Review & Editing
Visualization
Supervision
Project Administration
Funding acquisition
The taxonomy is an open standard conformiing to the OpenStand principles,[19] and is published under a
Creative Commons licence.[18]
In communications theory
Frederick Suppe[21] distinguished two senses of classification: a broad meaning, which he called
"conceptual classification" and a narrow meaning, which he called "systematic classification".
About conceptual classification Suppe wrote:[21]: 292 "Classification is intrinsic to the use of language,
hence to most if not all communication. Whenever we use nominative phrases we are classifying the
designated subject as being importantly similar to other entities bearing the same designation; that is, we
classify them together. Similarly the use of predicative phrases classifies actions or properties as being of
a particular kind. We call this conceptual classification, since it refers to the classification involved in
conceptualizing our experiences and surroundings"
About systematic classification Suppe wrote:[21]: 292 "A second, narrower sense of classification is the
systematic classification involved in the design and utilization of taxonomic schemes such as the
biological classification of animals and plants by genus and species.
The "has-a" relationship is quite different: an elephant has a trunk; a trunk is a part, not a subtype of
elephant. The study of part-whole relationships is mereology.
Taxonomies are often represented as is-a hierarchies where each level is more specific than the level
above it (in mathematical language is "a subset of" the level above). For example, a basic biology
taxonomy would have concepts such as mammal, which is a subset of animal, and dogs and cats, which
are subsets of mammal. This kind of taxonomy is called an is-a model because the specific objects are
considered as instances of a concept. For example, Fido is-an instance of the concept dog and Fluffy is-a
cat.[23]
In linguistics, is-a relations are called hyponymy. When one word describes a category, but another
describe some subset of that category, the larger term is called a hypernym with respect to the smaller, and
the smaller is called a "hyponym" with respect to the larger. Such a hyponym, in turn, may have further
subcategories for which it is a hypernym. In the simple biology example, dog is a hypernym with respect
to its subcategory collie, which in turn is a hypernym with respect to Fido which is one of its hyponyms.
Typically, however, hypernym is used to refer to subcategories rather than single individuals.
Research
Researchers reported that large populations consistently
develop highly similar category systems. This may be
relevant to lexical aspects of large communication networks
and cultures such as folksonomies and language or human
communication, and sense-making in general.[24][25]
Knowledge organization
Hull (1998) suggested "The fundamental elements of any classification are its theoretical commitments,
basic units and the criteria for ordering these basic units into a classification".[26]
There is a widespread opinion in knowledge organization and related fields that such classes corresponds
to concepts. We can, for example, classify "waterfowls" into the classes "ducks", "geese", and "swans";
we can also say, however, that the concept “waterfowl” is a generic broader term in relation to the
concepts "ducks", "geese", and "swans". This example demonstrates the close relationship between
classification theory and concept theory. A main opponent of concepts as units is Barry Smith.[27] Arp,
Smith and Spear (2015) discuss ontologies and criticize the conceptualist understanding.[28]: 5ff The book
writes (7): “The code assigned to France, for example, is ISO 3166 – 2:FR and the code is assigned to
France itself — to the country that is otherwise referred to as Frankreich or Ranska. It is not assigned to
the concept of France (whatever that might be).” Smith's alternative to concepts as units is based on a
realist orientation, when scientists make successful claims about the types of entities that exist in reality,
they are referring to objectively existing entities which realist philosophers call universals or natural
kinds. Smith's main argument - with which many followers of the concept theory agree - seems to be that
classes cannot be determined by introspective methods, but must be based on scientific and scholarly
research. Whether units are called concepts or universals, the problem is to decide when a thing (say a
"blackbird") should be considered a natural class. In the case of blackbirds, for example, recent DNA
analysis have reconsidered the concept (or universal) "blackbird" and found that what was formerly
considered one species (with subspecies) are in reality many different species, which just have chosen
similar characteristics to adopt to their ecological niches.[29]: 141
An important argument for considering concepts the basis of classification is that concepts are subject to
change and that they change when scientific revolutions occur. Our concepts of many birds, for example,
have changed with recent development in DNA analysis and the influence of the cladistic paradigm - and
have demanded new classifications. Smith's example of France demands an explanation. First, France is
not a general concept, but an individual concept. Next, the legal definition of France is determined by the
conventions that France has made with other countries. It is still a concept, however, as Leclercq (1978)
demonstrates with the corresponding concept Europe.[30]
Hull (1998) continued:[26] "Two fundamentally different sorts of classification are those that reflect
structural organization and those that are systematically related to historical development." What is
referred to is that in biological classification the anatomical traits of organisms is one kind of
classification, the classification in relation to the evolution of species is another (in the section below, we
expand these two fundamental sorts of classification to four). Hull adds that in biological classification,
evolution supplies the theoretical orientation.[26]
Ereshevsky
Ereshefsky (2000) presented and discussed three general philosophical schools of classification:
"essentialism, cluster analysis, and historical classification. Essentialism sorts entities according to causal
relations rather than their intrinsic qualitative features."[31]
These three categories may, however, be considered parts of broader philosophies. Four main approaches
to classification may be distinguished: (1) logical and rationalist approaches including "essentialism"; (2)
empiricist approaches including cluster analysis. (It is important to notice that empiricism is not the same
as empirical study, but a certain ideal of doing empirical studies. With the exception of the logical
approaches they all are based on empirical studies, but are basing their studies on different philosophical
principles). (3) Historical and hermeneutical approaches including Ereshefsky's "historical classification"
and (4) Pragmatic, functionalist and teleological approaches (not covered by Ereshefsky). In addition,
there are combined approaches (e.g., the so-called evolutionary taxonomy", which mixes historical and
empiricist principles).
Empiricist approaches
"Empiricism alone is not enough: a healthy advance in taxonomy depends on a sound theoretical
foundation"[36]: 548
Phenetics or numerical taxonomy[37] is by contrast bottom-up classification, where the starting point is
a set of items or individuals, which are classified by putting those with shared characteristics as members
of a narrow class and proceeding upward. Numerical taxonomy is an approach based solely on
observable, measurable similarities and differences of the things to be classified. Classification is based
on overall similarity: the elements that are most alike in most attributes are classified together. But it is
based on statistics, and therefore does not fulfill the criteria of logical division (e.g. to produce classes,
that are mutually exclusive and jointly coextensive with the class they divide). Some people will argue
that this is not classification/taxonomy at all, but such an argument must consider the definitions of
classification (see above). These methods may overall be related to the empiricist theory of knowledge.
The historical and hermeneutical approaches is not restricted to the development of the object of
classification (e.g., animal species) but is also concerned with the subject of classification (the classifiers)
and their embeddedness in scientific traditions and other human cultures.
John Stuart Mill explained the artificial nature of the Linnaean classification and suggested the following
definition of a natural classification:
"The Linnæan arrangement answers the purpose of making us think together of all those
kinds of plants, which possess the same number of stamens and pistils; but to think of them
in that manner is of little use, since we seldom have anything to affirm in common of the
plants which have a given number of stamens and pistils."[47]: 498 "The ends of scientific
classification are best answered, when the objects are formed into groups respecting which a
greater number of general propositions can be made, and those propositions more important,
than could be made respecting any other groups into which the same things could be
distributed."[47]: 499 "A classification thus formed is properly scientific or philosophical, and
is commonly called a Natural, in contradistinction to a Technical or Artificial, classification
or arrangement."[47]: 499
"artificial classification. The term (like its opposite, natural classification) has many
meanings; in this book I have picked a phenetic meaning. A classificatory group will be
defined by certain characters, called defining characters; in an artificial classification, the
members of a group resemble one another in their defining characters (as they must, by
definition) but not in their non-defining characters. With respect to the characters not used in
the classification, the members of a group are uncorrelated.
"natural classification. Classificatory groups are defined by certain characters, called
'defining' characters; in a natural group, the members of the group resemble one another for
non-defining characters as well as for the defining character. This is not the only meaning for
what is perhaps the most variously used term in taxonomy ...
Periodic table
The periodic table is the classification of the chemical elements which is in particular associated with
Dmitri Mendeleev (cf., History of the periodic table). An authoritative work on this system is Scerri
(2020).[49] Hubert Feger (2001; numbered listing added) wrote about it:[50]: 1967–1968 "A well-known, still
used, and expanding classification is Mendeleev's Table of Elements. It can be viewed as a prototype of
all taxonomies in that it satisfies the following evaluative criteria:
Linnaean taxonomy
Linnaean taxonomy is the particular form of biological classification (taxonomy) set up by Carl Linnaeus,
as set forth in his Systema Naturae (1735) and subsequent works. A major discussion in the scientific
literature is whether a system that was constructed before Charles Darwin's theory of evolution can still
be fruitful and reflect the development of life.[52][53]
Astronomy
Astronomy is a fine example on how Kuhn's (1962) theory of scientific revolutions (or paradigm shifts)
influences classification.[54] For example:
Paradigm one: Ptolemaic astronomers might learn the concepts "star" and "planet" by
having the Sun, the Moon, and Mars pointed out as instances of the concept “planet” and
some fixed stars as instances of the concept “star.”
Paradigm two: Copernicans might learn the concepts "star", "planet", and "satellites" by
having Mars and Jupiter pointed out as instances of the concept “planet,” the Moon as an
instance of the concept “satellite,” and the Sun and some fixed stars as instances of the
concept "star". Thus, the concepts "star", "planet", and "satellite" got a new meaning and
astronomy got a new classification of celestial bodies.
Idiophones: instruments that rely on the body of the instrument to create and resonate
sound.
Membranophones: instruments that have a membrane that is stretched over a structure,
often wood or metal, and struck or rubbed to produce a sound. The subcategories are
largely determined by the shape of the structure that the membrane is stretched over.
Chordophone: Instruments that use vibrating strings, which are most commonly stretched
across a metal or wooden structure, to create sound.
Aerophones Instruments that require air passing through, or across, them to create sound.
Most commonly constructed of wood or metal.
A fifth top category,
Electrophones: Instruments that require electricity to be amplified and heard. This group was
added by Sachs in 1940.
Each top category is subdivided and Hornbostel-Sachs is a very comprehensive classification of musical
instruments with wide applications. In Wikipedia, for example, all musical instruments are organized
according to this classification.
In opposition to, for example, the astronomical and biological classifications presented above, the
Hornbostel-Sachs classification seems very little influenced by research in musicology and organology. It
is based on huge collections of musical instruments, but seems rather as a system imposed upon the
universe of instruments than as a system with organic connections to scholarly theory. It may therefore be
interpreted as a system based on logical division and rationalist philosophy.
Mathematics
Attribute-value system, a basic knowledge representation framework
Classification theorems in mathematics
Mathematical classification, grouping mathematical objects based on a property that all
those objects share
Statistical classification, identifying to which of a set of categories a new observation
belongs, on the basis of a training set of data
Media
Classification (literature), a figure of speech linking a proper noun to a common noun using
the or other articles
Decimal classification, decimal classification systems
Document classification, a problem in library science, information science and computer
science
Classified information, sensitive information to which access is restricted by law or
regulation to particular classes of people
Library classification, a system of coding, assorting and organizing library materials
according to their subject
Image classification in computer vision
Motion picture rating system, for film classification
Science
Scientific classification (disambiguation)
Biological classification of organisms
Chemical classification
Medical classification, the process of transforming descriptions of medical diagnoses
and procedures into universal medical code numbers
Taxonomic classification, also known as classification of species
Cladistics, an approach using similarities
Other
An industrial process such as mechanical screening for sorting materials by size, shape,
density, etc.
Civil service classification, personnel grades in government
Classification of swords
Classification of wine
Locomotive classification
Product classification
Security classification, information to which access is restricted by law or regulation
Ship classification society, a non-governmental organization that establishes and maintains
technical standards for the construction and operation of ships and offshore structures
See also
All pages with titles containing Taxonomy
The dictionary definition of taxonomy at Wiktionary
The dictionary definition of classification scheme at Wiktionary
Categorization, the process of dividing things into groups
Classification (general theory)
Celestial Emporium of Benevolent Recognition, a fictional Chinese encyclopedia with an
"impossible" taxonomic scheme
Conflation
Faceted classification
Folksonomy
Gellish English dictionary, a taxonomy in which the concepts are arranged as a subtype–
supertype hierarchy
Hypernym
Knowledge representation
Lexicon
Ontology (information science), formal representation of knowledge as a set of concepts
within a domain
Philosophical language
Protégé (software)
Semantic network
Semantic similarity network
Structuralism
Systematics
Taxon, a population of organisms that a taxonomist adjudges to be a unit
Taxonomy for search engines
Thesaurus (information retrieval)
Typology (disambiguation)
Notes
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and Classes in the Wikipedia Taxonomy" (http://webarchive.nationalarchives.gov.uk/201401
11074556/http://www.h%2Dits.org/english/research/nlp/papers/zirn08.pdf) (video lecture). (h
ttp://videolectures.net/eswc08_zirn_dbi/) Archived (https://web.archive.org/web/2019122012
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6. Jackson, Joab. "Taxonomy's not just design, it's an art," (http://gcn.com/Articles/2004/02/03/
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External links
Media related to Taxonomy at Wikimedia Commons
The dictionary definition of taxonomy at Wiktionary
Taxonomy 101: The Basics and Getting Started with Taxonomies (http://www.kmworld.com/
Articles/Editorial/What-Is/Taxonomy-101-The-Basics-and-Getting-Started-with-Taxonomies-
98787.aspx)
Parrochia, Daniel 2016. "Classification" (http://www.iep.utm.edu/classifi/). In The Internet
Encyclopedia of Philosophy eds. James Fieser and Bradley Dowden.