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    3D Slicer

    Uploaded by

    Jestonie Ordonez
    The document provides instructions for using the 3D Slicer software to create 3D models from medical imaging data. It describes how to load DICOM image files, adjust views, crop regions of interest, create label maps, and save 3D models. The steps include loading files, adjusting contrast and zooming, cropping unwanted areas, assigning color labels to different tissues, and using effects to isolate labels and build 3D models. The process allows generating 3D printable models from medical images.

    Copyright:

    © All Rights Reserved
    Download as PDF, TXT or read online from Scribd

    3D Slicer

    Uploaded by

    Jestonie Ordonez
    29 views6 pages
    The document provides instructions for using the 3D Slicer software to create 3D models from medical imaging data. It describes how to load DICOM image files, adjust views, crop regions of interest, create label maps, and save 3D models. The steps include loading files, adjusting contrast and zooming, cropping unwanted areas, assigning color labels to different tissues, and using effects to isolate labels and build 3D models. The process allows generating 3D printable models from medical images.

    Original Title

    3D SLICER

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    The document provides instructions for using the 3D Slicer software to create 3D models from medical imaging data. It describes how to load DICOM image files, adjust views, crop regions of interest, create label maps, and save 3D models. The steps include loading files, adjusting contrast and zooming, cropping unwanted areas, assigning color labels to different tissues, and using effects to isolate labels and build 3D models. The process allows generating 3D printable models from medical images.

    Copyright:

    © All Rights Reserved
    Download as PDF, TXT or read online from Scribd
    Download as pdf or txt
    29 views6 pages

    3D Slicer

    Uploaded by

    Jestonie Ordonez
    The document provides instructions for using the 3D Slicer software to create 3D models from medical imaging data. It describes how to load DICOM image files, adjust views, crop regions of interest, create label maps, and save 3D models. The steps include loading files, adjusting contrast and zooming, cropping unwanted areas, assigning color labels to different tissues, and using effects to isolate labels and build 3D models. The process allows generating 3D printable models from medical images.

    Copyright:

    © All Rights Reserved
    Download as PDF, TXT or read online from Scribd
    Download as pdf or txt
    You are on page 1of 6

    “Medical Imaging in Radiation Oncology and Beyond”

    3D MODELING USING THE 3D SLICER SOFTWARE

    3D SLICER
    A. The Interface:

    Tips: Hover above the icons to reveal short descriptions.

    Click the drop down menu to see the organized modules, and click on ‘ALL MODULES’ for the entire list.

    1 Guide by D.R.Arzabal
    PLC – August 13, 2021
    De La Salle University, Manila
    “Medical Imaging in Radiation Oncology and Beyond”
    3D MODELING USING THE 3D SLICER SOFTWARE

    Clicking the icon will


    show the different
    viewing setting of the
    software.

    B. How to Load Data:

    1. Identify the DICOM (3D Images) file.


    2. Drag the file to the right panels, or use the ‘LOAD”
    icon on the upper left corner and look for the files.

    The prompt automatically


    appears. Highlight the uploaded
    file, and click ‘LOAD’, then click
    ‘OKAY’.

    3. Press and hold the left mouse button and


    move up/down, left/right to adjust the Apply the steps 3-5 to the CT windows below:
    contrast and brightness of the 3D image.
    4. Press and hold the control key and left
    mouse button while moving up /down to
    zoom-in/zoom-out.
    5. Press and hold the shift key and left mouse
    key to pan the image.
    6. Press the shift key while hovering the
    mouse to move the 3D slices across
    sagittal, transverse, coronal windows.
    2 Guide by D.R.Arzabal
    PLC – August 13, 2021
    De La Salle University, Manila
    “Medical Imaging in Radiation Oncology and Beyond”
    3D MODELING USING THE 3D SLICER SOFTWARE

    C. How to crop a specific part

    1. Choose the ‘VOLUME RENDERING’ module

    2. Click on the eye


    icon beside
    ‘Volume’, wait
    until the image
    appears in 3D
    view. In some
    cases, zooming
    out is needed
    to see enclose
    the 3D image in
    this window.

    Put a check on ‘ENABLE’ and


    ‘DISPLAY ROI’ (region of
    interest) for the 3D rendering
    and volume borders. The ROI
    can be adjusted using the
    cursor.

    3 Guide by D.R.Arzabal
    PLC – August 13, 2021
    De La Salle University, Manila
    “Medical Imaging in Radiation Oncology and Beyond”
    3D MODELING USING THE 3D SLICER SOFTWARE

    The software automatically


    names the newly created
    ROI.

    Note: The region of interest was already identified, but no cropping is applied yet.

    2. Choose the ‘CROP VOLUME’ module.

    4 Guide by D.R.Arzabal
    PLC – August 13, 2021
    De La Salle University, Manila
    “Medical Imaging in Radiation Oncology and Beyond”
    3D MODELING USING THE 3D SLICER SOFTWARE

    D. How to create a label map:

    Optional Steps:
    3. In both ‘CROP VOLUME’ and ‘VOLUME RENDERING’ modules, turn off the visibility by clicking on the
    eye icons. This removes the lines not needed in creating the label map.

    1. Choose the ‘EDITOR’ module, expect a prompt,


    and click ‘OK/Apply’.

    Names for the previous


    cropped volume and new-
    labeled volume are
    automatically generated.
    The 3D rendering
    can be turned off
    to lessen visual
    information.

    Choose the appropriate


    label value by clicking on
    the color swatch.

    5 Guide by D.R.Arzabal
    PLC – August 13, 2021
    De La Salle University, Manila
    “Medical Imaging in Radiation Oncology and Beyond”
    3D MODELING USING THE 3D SLICER SOFTWARE

    List of labels.
    Click on the
    ‘Threshold Effect’
    icon. Adjust the If needed to
    values to isolate separate the parts,
    the desired part. use ‘Change Island
    Effect’ by manually
    selecting.

    Build the model


    using ‘Make
    Model Effect’, and
    choose the label,
    and click ‘APPLY’.

    E. How to save the 3D model:


    1. Click on the ‘SAVE’ icon. A prompt will appear.

    The prompt contains all the


    reconstructed parts of each
    step.
    Make sure to look for the
    model created towards the
    end.

    Remove the check from the


    other files unless these are
    intended to be saved too.
    Choose the file format
    compatible to the 3D
    printer to the used. Then,
    click ‘SAVE’.

    - END -
    6 Guide by D.R.Arzabal
    PLC – August 13, 2021
    De La Salle University, Manila

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